Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enteromyxum_20leei_20[genbank_20GCA_5F001455295.1_202015-12-02] 69,045 sequences; 67,975,573 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq22640 250 4e-61 seq25167 154 2e-32 seq59245 132 7e-26 seq68710 105 1e-17 seq67756 105 1e-17 >seq22640 Length=3951 Score = 250 bits (276), Expect = 4e-61 Identities = 751/1142 (66%), Gaps = 43/1142 (4%) Strand=Plus/Minus Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 |||||||| ||||| || || | ||| | |||||||| | ||||| ||||| | ||| Sbjct 1947 TGAAATTCCCCAGATAAAACACGTCGATTATAAATATTTGTTGTATAAGGTTCAATAGAT 1888 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 || || ||||||| ||||||| ||||| ||||| ||||| ||||| | || | |||| Sbjct 1887 TCGTTGTTTCCCATTATTTGAGACGTTGACGCCGTAGGCATTGGTGCAATTAAAAGACTA 1828 Query 79183 TTTCTAAGACCGTATGATC--TGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAG 79240 ||||||| ||| ||| || |||||||| |||| | |||| ||||||||| | ||||| Sbjct 1827 TTTCTAACACC--ATGTTCCTTGATTTTAGCTTTCAATGATTTCCAATCCCATAAATCAG 1770 Query 79241 ACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGT 79300 || || |||||| | |||||||||| ||||| | | | ||| || ||| Sbjct 1769 TAGGAGTAATATTCCACATGTCATATTGTAAGATACCTTGAGATATGGGTGAATCTTTGT 1710 Query 79301 ATGTTTCATA-AGGTCCT-TCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 | || || | | | | | ||||| ||| |||||| | ||| | ||| | | Sbjct 1709 AAGTGGAGTATACGCCATGTTCTTTT--GCTTCTTCACATGAAGACTCAAGTGCGGCATG 1652 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATT-GAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417 ||| || ||||| || || | |||| | || || |||||| |||||| ||||| Sbjct 1651 ATATATTGTTTCAAATATTTCAATATTCAACTTCCTG-GCTTCTGCGCTATCGAATGG-C 1594 Query 79418 AATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476 | | |||| || || || || || | ||||| || ||||| || | ||||||||| Sbjct 1593 ATTCTAAGTTTGATGAATGCATCAGCAAGACCTTGTACGCCAATTCCTACAGGTCTATGA 1534 Query 79477 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 79536 | | |||| ||| ||| |||||| || ||||| |||| | ||| || || ||||| Sbjct 1533 CGCATATTTGAATTTTTTGCTTCTATAACGGGATAGAAATTCAAATCAATTATCTTATTC 1474 Query 79537 AGATTCCTGACTATTACTT---TGACCACAT---CCTTTAGTTTGAGA--AAATCAAATC 79588 | ||| | |||||||||| ||||| ||| ||| ||||| | |||| | Sbjct 1473 AAGTTCTTAACTATTACTTTTGTGACCTCATGAAGCTT---TTTGAAATGAAATGTTTTA 1417 Query 79589 GT-CCATCTATT---------------ACAAACATGTTCAACGCGACAGATGCCAGATTA 79632 || |||| || |||||| | || | ||| || || || Sbjct 1416 GTATTATCTTTTTCAGATTTTGAATAAACAAACTTCGGCAGACATATAGAAGCTAGGTTG 1357 Query 79633 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACAC 79692 || || || |||| ||| | || | | |||||||| || | || || || Sbjct 1356 CACACAGCGGTTTCATCTTTATCAGAGTACTCAACAATTTCAGTACACAAATTGCTTGAC 1297 Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 79752 || || ||| | ||||| ||||||| || || || ||||| || |||| ||| Sbjct 1296 TTGATCACTCCAACATTTTTTTGATTAGATTTGCGATTGCATGCATCTTTGTAAACCATG 1237 Query 79753 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 79812 | || |||||||||| || |||| ||| | ||| | ||| | | |||| || Sbjct 1236 TATGGCATACCAGTTTCTATTTGAGCTTCCAAAATAGAAAACCACAAAGCCTGAGCGTTA 1177 Query 79813 ATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGT-TCGAACTCGTC 79871 ||| ||| || | ||||| ||| || | ||| || || | | | || || || Sbjct 1176 ATTTGCTTCTTATAACGTTTTTCAGATTCATACTTTGTGTA-AAGCTTATTAAATTCTTC 1118 Query 79872 TCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATC 79931 || | ||| |||||| || |||| | ||||||||||| ||||||| | ||| Sbjct 1117 ACCGTAGCAATCAGATAATCCTGGTGATTCATGTGGACACATCAAAGACCACTTTTCATT 1058 Query 79932 ATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 79991 || ||||| || | |||||| | ||| || ||||| | || ||| | ||||| | Sbjct 1057 ATTTTTTACACGCTCCATAAATAAATCCGGTATCCATAATGCATAAAACAAGTCTCTAGC 998 Query 79992 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 80051 | || ||| | || || || ||| | | || | || | | ||||| || || Sbjct 997 GCGTACTTCTTCGCTGCCAGTGTTTTTTCTCAATTCTAAAAATTCTTTTATATCTGAGTG 938 Query 80052 CCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTA 80111 ||||||||| | ||| | || | || || || || ||||| || ||||||| ||| Sbjct 937 CCACGGTTCGAGGTAAACAGCAAATGAACCAGGGCGCTTATTTCCACCTTGATCTACGTA 878 Query 80112 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCATTGGATGTACCATTGG 80170 ||| | ||||| || || |||||||||| |||| |||| ||||| ||| | ||||| | Sbjct 877 TCTGGACGTGTTGTTGTACACTCTCAACAACGGAACTAAT-CCATTTGATATTCCATTAG 819 Query 80171 TC 80172 || Sbjct 818 TC 817 Score = 132 bits (146), Expect = 7e-26 Identities = 220/316 (70%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || ||||| || || ||| || || | || |||| || | |||||| | ||||| Sbjct 552 CCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCCTTCAGGGTATCAAAAATGCCT 493 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || |||||||| || |||| | ||||| || || |||||||| | | ||| Sbjct 492 TCAATGCTATCGTCTTTCATAGCGACAAGAAAGCAACTGGACATTTGTGGTCTGGGAGTA 433 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || | || || || ||||| | ||||| ||||||||| ||||||| || |||||| Sbjct 432 CCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATCCATCAGACATTAAATTGTAA 373 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGA--ATTCCTACCGCGACACGCATTAACA 80455 || |||||||| | || ||||| ||| ||| ||||| || || || | ||| | || Sbjct 372 GTTTCAATAGCGGCATCAATATC--ATTCATGTGTATTCCAACAGCCACTCTCATCAGCA 315 Query 80456 TGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAG 80515 |||| || ||||||||||| | | | || ||| ||| ||| || || |||| | | Sbjct 314 TGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCAAATACGACCTTTCAAGTG 255 Query 80516 TTTTAAAACCAAAATA 80531 |||| || |||||||| Sbjct 254 TTTTGAAGCCAAAATA 239 Score = 86.0 bits (94), Expect = 9e-12 Identities = 164/240 (68%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 78697 TTTATCTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGA 78756 || || ||||| | || | || |||||||| ||| | ||||| | | | ||| Sbjct 2348 TTAATTTTATCGGTATCAACAGTAAATTGAATAGGATTTGCACCGGGTCTTGATCTAAGA 2289 Query 78757 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTT- 78815 ||||||||||| ||||| || || | |||||||||| |||||||| || || ||||| Sbjct 2288 TAGTACATTCCAGTTTTGAGGCCCTTATTCCATCCGTAAAAATGCATGCTAGTAAGTTTT 2229 Query 78816 -GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTC 78874 || | | || || || ||| | || | ||||||||||||||| || || | | Sbjct 2228 CCGACTGA--AGGTTCAGCCATAAAAACGTTGAAAGATTGACTTTGATCAATAAAAGGAC 2171 Query 78875 CCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA 78934 | | || |||||||| | || | || || || || |||||| |||||||||| Sbjct 2170 CACGATCAGCAGCCATATCAATAAGTGTTTTCATTGAAAGTTCCCATGAGGTTTTATAAA 2111 >seq25167 Length=1585 Score = 154 bits (170), Expect = 2e-32 Identities = 206/282 (73%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||| || ||||||| || || |||||| | |||| | || ||| || || Sbjct 1339 ATTTATCCAGTTGAGAGCCCACTCAGCTTTCTTTCTGACACTACTTATATGTTCAATTGC 1280 Query 50193 ATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTA 50250 ||| ||| | | |||| || | |||||| | |||||| |||||||| || || Sbjct 1279 GCCAAAAAGACGTTCTCTTTC--TAATGGATCTTTGATATAAGTGTCGATCAACAGGCTG 1222 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC- 50309 |||||||| || ||||| |||||||| || || || | ||| || || ||||| | || Sbjct 1221 TACATTTCTGAGTGAATATTTTCAATTGCAATTTGCAGTCCATAAAAGCATCTGACTTCA 1162 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 || || || ||||| | ||| | |||| | || |||||||| || || || ||||| Sbjct 1161 GGCCAT-TGTACTTCACTTGCAAAACATTCAACCAAGTTTTCATTTACAATACCATCACT 1103 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTC 50411 ||| ||||| ||||||||||||||| || |||||||||||| Sbjct 1102 GGCAGCAAAGAACGCCAATACATGTGATACAAAATGTTTTTC 1061 >seq59245 Length=1049 Score = 132 bits (146), Expect = 7e-26 Identities = 220/316 (70%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || ||||| || || ||| || || | || |||| || | |||||| | ||||| Sbjct 498 CCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCCTTCAGGGTATCAAAAATGCCT 557 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || |||||||| || |||| | ||||| || || |||||||| | | ||| Sbjct 558 TCAATGCTATCGTCTTTCATAGCGACAAGAAAGCAACTGGACATTTGTGGTCTGGGAGTA 617 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || | || || || ||||| | ||||| ||||||||| ||||||| || |||||| Sbjct 618 CCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATCCATCAGACATTAAATTGTAA 677 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGA--ATTCCTACCGCGACACGCATTAACA 80455 || |||||||| | || ||||| ||| ||| ||||| || || || | ||| | || Sbjct 678 GTTTCAATAGCGGCATCAATATC--ATTCATGTGTATTCCAACAGCCACTCTCATCAGCA 735 Query 80456 TGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAG 80515 |||| || ||||||||||| | | | || ||| ||| ||| || || |||| | | Sbjct 736 TGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCAAATACGACCTTTCAAGTG 795 Query 80516 TTTTAAAACCAAAATA 80531 |||| || |||||||| Sbjct 796 TTTTGAAGCCAAAATA 811 >seq68710 Length=718 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 326 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 385 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || || || |||| Sbjct 386 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 445 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 446 CCACCACACGCTCTCC 461 >seq67756 Length=723 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 393 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 334 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || || || |||| Sbjct 333 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 274 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 273 CCACCACACGCTCTCC 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717648889133800