Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enteromyxum_20leei_20[genbank_20GCA_5F001455295.1_202015-12-02] 69,045 sequences; 67,975,573 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq24282 134 3e-26 seq25167 127 5e-24 seq16394 102 2e-16 >seq24282 Length=3510 Score = 134 bits (148), Expect = 3e-26 Identities = 117/143 (82%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGC- 104478 || |||||||| | || || ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 2 CCTGCAAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGAAT-TTTGCT 60 Query 104479 TTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||||| | || | || |||| ||||||| || || || || || ||||| |||||||| Sbjct 61 TTTTACAATCTCAATGGCATCGTTAGGTTCAACATCAAGAGTTATGGTCTTGCCAGTAAG 120 Query 104539 TGTTTTTACAAATATCTGCATTT 104561 |||||| || ||||||||||||| Sbjct 121 TGTTTTGACGAATATCTGCATTT 143 >seq25167 Length=1585 Score = 127 bits (140), Expect = 5e-24 Identities = 205/286 (72%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 268828 AGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGT 268887 |||||||| | ||| |||| || | | ||||| ||||| | ||||||||||| || Sbjct 1057 AGAAGAAAAACATTTTGTATCACATGTATTGGCGTTCTTTGCTGCCAGTGATGGTATTGT 1116 Query 268888 TAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAG--GTACAGATTCCTGAAGCCAGATGT 268945 || ||||| | || || | ||| || |||| | ||||| ||||||| |||||| Sbjct 1117 AAATGAAAACTTGGTTGA-ATGTTTTG-CAAGTGAAGTACAATGGCCTGAAGTCAGATGC 1174 Query 268946 TTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATA 269005 ||||| ||| | || || || || ||||||||||| ||||| |||||||| || || || Sbjct 1175 TTTTATGGACTGCAAATTGCAATTGAAAATATTCACTCAGAAATGTACAGCCTGTTGATC 1234 Query 269006 GATACTTATATAGATGATAACAACGAAAAGA-AAAGACTATTTTCTTCTATGAGAAC-TA 269063 || |||||||| | ||| || ||||| || | || ||| | || |||| || Sbjct 1235 GACACTTATATCAAAGAT-CCATTAGAAAGAGAACGTCTTTTTGGCGCAAT-TGAACATA 1292 Query 269064 TGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | |||| ||||| ||| |||| |||||||| || |||||||| Sbjct 1293 TAAGTAGTGTCAGAAAGAAAGCTGAGTGGGCTCTCAACTGGATAAA 1338 >seq16394 Length=525 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | || | || | ||||| || ||||||||||| || || ||||||| | Sbjct 397 CCTCCTCTCAATCTCAACACCAAATGTAGGGTTGATTCTTTCTGGATGTTGTAGTCAGTT 456 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| ||||| ||||| |||||||| || |||||||| | || || ||||| ||||| Sbjct 457 AAAGTCCTACCATCTTCGAGTTGTTTACCTGCAAAAATCAATCTTTGCTGATCTGGAGGA 516 Query 104453 ATTCCTTCT 104461 ||||||||| Sbjct 517 ATTCCTTCT 525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150379827998860