Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enteromyxum_20leei_20[genbank_20GCA_5F001455295.1_202015-12-02] 69,045 sequences; 67,975,573 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq22640 163 4e-35 seq25167 156 5e-33 seq59245 123 3e-23 seq68710 114 2e-20 seq67756 114 2e-20 >seq22640 Length=3951 Score = 163 bits (180), Expect = 4e-35 Identities = 730/1141 (64%), Gaps = 43/1141 (4%) Strand=Plus/Minus Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 |||||||| ||||| || || | ||| | |||||||| | ||||| ||||| | || Sbjct 1947 TGAAATTCCCCAGATAAAACACGTCGATTATAAATATTTGTTGTATAAGGTTCAATAGAT 1888 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62459 || || ||||||| ||||||| ||||| || || ||||| ||||| | || | |||| Sbjct 1887 TCGTTGTTTCCCATTATTTGAGACGTTGACGCCGTAGGCATTGGTGCAATTAAAAGACTA 1828 Query 62460 TTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62517 ||||||| ||| |||||| |||||||| |||| | | || ||||| ||| | ||| | Sbjct 1827 TTTCTAACACC--ATGTTCCTTGATTTTAGCTTTCAATGATTTCCAATCCCATAAATCAG 1770 Query 62518 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTAC---TGGCGTACGATCCTA 62574 || || ||||| ||||| | | ||| || || || Sbjct 1769 TAGGAGTAATATTCCACATGTCATATTGTAAGATACCTTGAGATATGG-GT--GAATCTT 1713 Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 || || |||| || | | | ||| |||||| | ||| | ||| | | Sbjct 1712 TGTAAGTGGAGTATACGCCATGTTCTTTTGCTTCTTCACATGAAGACTCAAGTGCGGCAT 1653 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGA 62693 ||| || ||||| || || | |||| | | | || ||||| |||||| ||||| Sbjct 1652 GATATATTGTTTCAAATATTTCAATATTCAACTTCCTG-GCTTCTGCGCTATCGAATGGC 1594 Query 62694 TAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 | | |||| || || || || || | ||||| || ||||| || | ||||||||| Sbjct 1593 -ATTCTAAGTTTGATGAATGCATCAGCAAGACCTTGTACGCCAATTCCTACAGGTCTATG 1535 Query 62753 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62812 | | |||| || ||| |||||| || ||||| |||| | ||| || || ||||| Sbjct 1534 ACGCATATTTGAATTTTTTGCTTCTATAACGGGATAGAAATTCAAATCAATTATCTTATT 1475 Query 62813 GAGATTTCTGACAATTACTTT---GACCACATCCTTCAGTTTGAGA--AAATCAAATCGC 62867 | || | || |||||||| |||| ||| | ||||| | |||| | | Sbjct 1474 CAAGTTCTTAACTATTACTTTTGTGACCTCATGAAGCTTTTTGAAATGAAATGTTTTAGT 1415 Query 62868 CC-ATCTATTACAAAC-----ATGTTCAA-----GGCA-----ACAGATGCCAGATTACA 62911 |||| || || | || ||| |||| | ||| || || || || Sbjct 1414 ATTATCTTTTTCAGATTTTGAATAAACAAACTTCGGCAGACATATAGAAGCTAGGTTGCA 1355 Query 62912 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62971 || || |||| ||| | || | | || ||||| || | ||| || |||| Sbjct 1354 CACAGCGGTTTCATCTTTATCAGAGTACTCAACAATTTCAGTACACAAATTGCTTGACTT 1295 Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031 ||| ||| | ||||| ||||||| || || || ||||| || |||| ||| | Sbjct 1294 GATCACTCCAACATTTTTTTGATTAGATTTGCGATTGCATGCATCTTTGTAAACCATGTA 1235 Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 63091 ||| |||||||||| || |||| ||| | ||| | ||| | | |||| || || Sbjct 1234 TGGCATACCAGTTTCTATTTGAGCTTCCAAAATAGAAAACCACAAAGCCTGAGCGTTAAT 1175 Query 63092 TATAGATTTGTATCTCCTTTCTCT--TTCGTATAGTGTATACAATCGT-TCGAACTCGTC 63148 | | || ||| | ||| || ||| || ||| || || | | | || || || Sbjct 1174 TT--GCTTCTTATAACGTTTTTCAGATTCATACTTTGTGTA-AAGCTTATTAAATTCTTC 1118 Query 63149 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63208 || | || ||||| || |||||| ||||||||||| ||||||| | | | Sbjct 1117 ACCGTAGCAATCAGATAATCCTGGTGATTCATGTGGACACATCAAAGACCACTTTTCATT 1058 Query 63209 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63268 || || || || | |||||| | ||| || ||||| | || ||| | ||||| | Sbjct 1057 ATTTTTTACACGCTCCATAAATAAATCCGGTATCCATAATGCATAAAACAAGTCTCTAGC 998 Query 63269 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63328 | ||| ||| | || || || ||| | | || | || | | ||||| || || Sbjct 997 GCGTACTTCTTCGCTGCCAGTGTTTTTTCTCAATTCTAAAAATTCTTTTATATCTGAGTG 938 Query 63329 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63388 ||||||||| | ||| | || | ||||| || || ||||| || ||||||| ||| Sbjct 937 CCACGGTTCGAGGTAAACAGCAAATGAACCAGGGCGCTTATTTCCACCTTGATCTACGTA 878 Query 63389 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCGTTTGATATACCATTGG 63447 ||| | ||||| || || |||||||||| |||| |||| || |||||||| ||||| | Sbjct 877 TCTGGACGTGTTGTTGTACACTCTCAACAACGGAACTAAT-CCATTTGATATTCCATTAG 819 Query 63448 T 63448 | Sbjct 818 T 818 Score = 123 bits (136), Expect = 3e-23 Identities = 218/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || ||||| || || ||| || || | || |||| || | || ||| | || || Sbjct 552 CCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCCTTCAGGGTATCAAAAATGCCT 493 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 || |||||||| || |||| | ||||| || || |||||||| | | ||| Sbjct 492 TCAATGCTATCGTCTTTCATAGCGACAAGAAAGCAACTGGACATTTGTGGTCTGGGAGTA 433 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || | || || || ||||| | ||||| ||||||||| ||||| | || |||||| Sbjct 432 CCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATCCATCAGACATTAAATTGTAA 373 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGA--ATTCCTACTGCGACACGCATTAACA 63732 || |||||||| | || ||||| ||| ||| ||||| || || || | ||| | || Sbjct 372 GTTTCAATAGCGGCATCAATATC--ATTCATGTGTATTCCAACAGCCACTCTCATCAGCA 315 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 |||| || ||||||||||| | | | ||| ||| ||| ||| || || |||| | | Sbjct 314 TGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCAAATACGACCTTTCAAGTG 255 Query 63793 TTTTAAAACCAAAATA 63808 |||| || |||||||| Sbjct 254 TTTTGAAGCCAAAATA 239 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 61973 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62032 ||| |||||||| | || | || |||||||| ||| | ||||| | | | || Sbjct 2349 TTTAATTTTATCGGTATCAACAGTAAATTGAATAGGATTTGCACCGGGTCTTGATCTAAG 2290 Query 62033 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62092 |||||||||||| ||||| || || | ||||||||||||||||||| || || ||||| Sbjct 2289 ATAGTACATTCCAGTTTTGAGGCCCTTATTCCATCCGTAAAAATGCATGCTAGTAAGTTT 2230 Query 62093 --GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCT 62150 || | | || || || ||| | || | ||||||||||||||| || || | Sbjct 2229 TCCGACTGA--AGGTTCAGCCATAAAAACGTTGAAAGATTGACTTTGATCAATAAAAGGA 2172 Query 62151 CCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAA 62210 || | || |||||||| | || | || || || || |||||| ||||||||| Sbjct 2171 CCACGATCAGCAGCCATATCAATAAGTGTTTTCATTGAAAGTTCCCATGAGGTTTTATAA 2112 Query 62211 A 62211 | Sbjct 2111 A 2111 >seq25167 Length=1585 Score = 156 bits (172), Expect = 5e-33 Identities = 209/286 (73%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 || |||||| || ||||||| || || |||||| | |||| | || ||| || || Sbjct 1339 ATTTATCCAGTTGAGAGCCCACTCAGCTTTCTTTCTGACACTACTTATATGTTCAATTGC 1280 Query 33537 ATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTA 33594 ||| ||| | | |||| || | |||||| | |||||| |||||||| || || Sbjct 1279 GCCAAAAAGACGTTCTCTTTC--TAATGGATCTTTGATATAAGTGTCGATCAACAGGCTG 1222 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC- 33653 |||||||| || ||||| |||||||| || || || | ||| || || ||||| | || Sbjct 1221 TACATTTCTGAGTGAATATTTTCAATTGCAATTTGCAGTCCATAAAAGCATCTGACTTCA 1162 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 || || |||||||| | ||| | ||| |||| |||||||| || || || ||||| Sbjct 1161 GGCCAT-TGTACTTCACTTGCAAAACATTCAACCAAGTTTTCATTTACAATACCATCACT 1103 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCT 33759 ||| ||||| ||||||||||||||| || ||||| |||||| ||| Sbjct 1102 GGCAGCAAAGAACGCCAATACATGTGATACAAAATGTTTTTCTTCT 1057 >seq59245 Length=1049 Score = 123 bits (136), Expect = 3e-23 Identities = 218/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || ||||| || || ||| || || | || |||| || | || ||| | || || Sbjct 498 CCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCCTTCAGGGTATCAAAAATGCCT 557 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 || |||||||| || |||| | ||||| || || |||||||| | | ||| Sbjct 558 TCAATGCTATCGTCTTTCATAGCGACAAGAAAGCAACTGGACATTTGTGGTCTGGGAGTA 617 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || | || || || ||||| | ||||| ||||||||| ||||| | || |||||| Sbjct 618 CCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATCCATCAGACATTAAATTGTAA 677 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGA--ATTCCTACTGCGACACGCATTAACA 63732 || |||||||| | || ||||| ||| ||| ||||| || || || | ||| | || Sbjct 678 GTTTCAATAGCGGCATCAATATC--ATTCATGTGTATTCCAACAGCCACTCTCATCAGCA 735 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 |||| || ||||||||||| | | | ||| ||| ||| ||| || || |||| | | Sbjct 736 TGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCAAATACGACCTTTCAAGTG 795 Query 63793 TTTTAAAACCAAAATA 63808 |||| || |||||||| Sbjct 796 TTTTGAAGCCAAAATA 811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 ||||| || ||||||||||| | ||| | || | ||||| || || ||||| || Sbjct 102 ATATCTGAGTGCCACGGTTCGAGGTAAACAGCAAATGAACCAGGGCGCTTATTTCCACCT 161 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCGTTTGA 63436 ||||||| |||||| | ||||| || || |||||||||| |||| |||| || ||||| Sbjct 162 TGATCTACGTATCTGGACGTGTTGTTGTACACTCTCAACAACGGAACTAAT-CCATTTGA 220 Query 63437 TATACCATTGGT 63448 ||| ||||| || Sbjct 221 TATTCCATTAGT 232 >seq68710 Length=718 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 326 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 385 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| |||||| || ||||| ||||||||||| || || ||||| |||| Sbjct 386 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 445 Query 33446 C 33446 | Sbjct 446 C 446 >seq67756 Length=723 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 393 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 334 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| |||||| || ||||| ||||||||||| || || ||||| |||| Sbjct 333 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 274 Query 33446 C 33446 | Sbjct 273 C 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622409557632200