Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enteromyxum_20leei_20[genbank_20GCA_5F001455295.1_202015-12-02] 69,045 sequences; 67,975,573 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq22640 159 4e-34 seq25167 150 2e-31 seq59245 132 6e-26 >seq22640 Length=3951 Score = 159 bits (176), Expect = 4e-34 Identities = 728/1142 (64%), Gaps = 43/1142 (4%) Strand=Plus/Minus Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 |||||||| ||||| || || | ||| | |||||||| | ||||| ||||| | ||| Sbjct 1947 TGAAATTCCCCAGATAAAACACGTCGATTATAAATATTTGTTGTATAAGGTTCAATAGAT 1888 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62314 || || ||||||| ||||||| ||||| || || ||||| ||||| | || | |||| Sbjct 1887 TCGTTGTTTCCCATTATTTGAGACGTTGACGCCGTAGGCATTGGTGCAATTAAAAGACTA 1828 Query 62315 TTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62372 ||||||| ||| |||||| |||||||| |||| | | || ||||| ||| | ||| | Sbjct 1827 TTTCTAACACC--ATGTTCCTTGATTTTAGCTTTCAATGATTTCCAATCCCATAAATCAG 1770 Query 62373 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA---CTGGCGTACGATCCTA 62429 || || ||||| ||||| | | ||| || || || Sbjct 1769 TAGGAGTAATATTCCACATGTCATATTGTAAGATACCTTGAGATATGG-GT--GAATCTT 1713 Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 || || |||| || | | | ||| |||||| | ||| | ||| | | Sbjct 1712 TGTAAGTGGAGTATACGCCATGTTCTTTTGCTTCTTCACATGAAGACTCAAGTGCGGCAT 1653 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATT-TAGATCTTGCGCTTCCAGGCTATCAAATGGA 62548 ||| || ||||| || || | |||| | || || ||||| |||||| ||||| Sbjct 1652 GATATATTGTTTCAAATATTTCAATATTCAACTTCCTG-GCTTCTGCGCTATCGAATGG- 1595 Query 62549 TAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607 | | |||| || || || || || | ||||| || ||||| || | ||||||||| Sbjct 1594 CATTCTAAGTTTGATGAATGCATCAGCAAGACCTTGTACGCCAATTCCTACAGGTCTATG 1535 Query 62608 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62667 | | |||| || ||| |||||| || ||||| |||| | ||| || || ||||| Sbjct 1534 ACGCATATTTGAATTTTTTGCTTCTATAACGGGATAGAAATTCAAATCAATTATCTTATT 1475 Query 62668 GAGATTTCTGACAATTACTT---TGACCACATCCTTCAGTTTGAGA--AAATCAAATCG- 62721 | || | || ||||||| ||||| ||| | ||||| | |||| | | Sbjct 1474 CAAGTTCTTAACTATTACTTTTGTGACCTCATGAAGCTTTTTGAAATGAAATGTTTTAGT 1415 Query 62722 CCCATCTATTACAAACATGTTCAAT------------GCA-----ACAGATGCCAGATTA 62764 |||| || | | || || ||| ||| | ||| || || || Sbjct 1414 ATTATCTTTTTC--AGATTTTGAATAAACAAACTTCGGCAGACATATAGAAGCTAGGTTG 1357 Query 62765 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 62824 || || || |||| ||| | || | | || ||||| || | ||| || || Sbjct 1356 CACACAGCGGTTTCATCTTTATCAGAGTACTCAACAATTTCAGTACACAAATTGCTTGAC 1297 Query 62825 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 62884 ||||| ||| | ||||| ||||||| || || || ||||| || |||| ||| Sbjct 1296 TTGATCACTCCAACATTTTTTTGATTAGATTTGCGATTGCATGCATCTTTGTAAACCATG 1237 Query 62885 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 62944 |||| |||||||||| || |||| ||| | ||| | ||| | | |||| || Sbjct 1236 TATGGCATACCAGTTTCTATTTGAGCTTCCAAAATAGAAAACCACAAAGCCTGAGCGTTA 1177 Query 62945 ATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT-TCGAACTCGTC 63003 ||| || || | ||||| ||| || ||| || || | | | || || || Sbjct 1176 ATTTGCTTCTTATAACGTTTTTCAGATTCATACTTTGTGTA-AAGCTTATTAAATTCTTC 1118 Query 63004 TCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63063 || | || | ||| || |||||| ||||||||||| ||||||| | | | Sbjct 1117 ACCGTAGCAATCAGATAATCCTGGTGATTCATGTGGACACATCAAAGACCACTTTTCATT 1058 Query 63064 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63123 || || || || | |||||| | ||| || ||||| | || ||| | ||||| | Sbjct 1057 ATTTTTTACACGCTCCATAAATAAATCCGGTATCCATAATGCATAAAACAAGTCTCTAGC 998 Query 63124 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63183 | ||| ||| | || || || ||| | | || | || | | ||||| || || Sbjct 997 GCGTACTTCTTCGCTGCCAGTGTTTTTTCTCAATTCTAAAAATTCTTTTATATCTGAGTG 938 Query 63184 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63243 ||||||||| | ||| | || | ||||| || || ||||| || ||||||| ||| Sbjct 937 CCACGGTTCGAGGTAAACAGCAAATGAACCAGGGCGCTTATTTCCACCTTGATCTACGTA 878 Query 63244 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCATTGGATGTACCATTGG 63302 ||| | ||||| || || |||||||||| |||| |||| ||||| ||| | ||||| | Sbjct 877 TCTGGACGTGTTGTTGTACACTCTCAACAACGGAACTAAT-CCATTTGATATTCCATTAG 819 Query 63303 TC 63304 || Sbjct 818 TC 817 Score = 132 bits (146), Expect = 6e-26 Identities = 220/316 (70%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || ||||| || || ||| || || | || |||| || | |||||| | ||||| Sbjct 552 CCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCCTTCAGGGTATCAAAAATGCCT 493 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || || ||||| || |||| | ||||| || || |||||||| | | ||| Sbjct 492 TCAATGCTATCGTCTTTCATAGCGACAAGAAAGCAACTGGACATTTGTGGTCTGGGAGTA 433 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 || | || || || ||||| | ||||||||||||||| ||||| | || |||||| Sbjct 432 CCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATCCATCAGACATTAAATTGTAA 373 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGA--ATTCCTACTGCGACACGCATTAACA 63587 || |||||||| | || ||||| ||| ||| ||||| || || || | ||| | || Sbjct 372 GTTTCAATAGCGGCATCAATATC--ATTCATGTGTATTCCAACAGCCACTCTCATCAGCA 315 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 |||| || ||||||||||| | | | ||| ||| ||| ||| || || |||| | | Sbjct 314 TGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCAAATACGACCTTTCAAGTG 255 Query 63648 TTTTAAAACCAAAATA 63663 |||| || |||||||| Sbjct 254 TTTTGAAGCCAAAATA 239 Score = 100 bits (110), Expect = 4e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 61828 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 61887 ||| |||||||| | || | || |||||||| ||| | ||||| | | | || Sbjct 2349 TTTAATTTTATCGGTATCAACAGTAAATTGAATAGGATTTGCACCGGGTCTTGATCTAAG 2290 Query 61888 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 61947 |||||||||||| ||||| || || | ||||||||||||||||||| || || ||||| Sbjct 2289 ATAGTACATTCCAGTTTTGAGGCCCTTATTCCATCCGTAAAAATGCATGCTAGTAAGTTT 2230 Query 61948 --GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCT 62005 || | | || || || ||| | || | ||||||||||||||| || || | Sbjct 2229 TCCGACTGA--AGGTTCAGCCATAAAAACGTTGAAAGATTGACTTTGATCAATAAAAGGA 2172 Query 62006 CCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAA 62065 || | || |||||||| | |||| || || || || |||||| ||||||||| Sbjct 2171 CCACGATCAGCAGCCATATCAATAAGTGTTTTCATTGAAAGTTCCCATGAGGTTTTATAA 2112 Query 62066 A 62066 | Sbjct 2111 A 2111 >seq25167 Length=1585 Score = 150 bits (166), Expect = 2e-31 Identities = 210/287 (73%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT-TGTCTCTATAG 32892 || |||||| || ||||||| || || |||||| | |||| | || ||| || || | Sbjct 1339 ATTTATCCAGTTGAGAGCCCACTCAGCTTTCTTTCTGACACTACTTATATGT-TCAATTG 1281 Query 32893 CATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACT 32950 | ||| ||| | | |||| || | |||||| | ||| || || ||||| || || Sbjct 1280 CGCCAAAAAGACGTTCTCTTTC--TAATGGATCTTTGATATAAGTGTCGATCAACAGGCT 1223 Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 |||||||| || ||||| |||||||| || ||||| | ||| || |||||||| | || Sbjct 1222 GTACATTTCTGAGTGAATATTTTCAATTGCAATTTGCAGTCCATAAAAGCATCTGACTTC 1163 Query 33011 -GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 || || |||||||| | ||| | ||| | || |||||||| || || || |||| Sbjct 1162 AGGCCAT-TGTACTTCACTTGCAAAACATTCAACCAAGTTTTCATTTACAATACCATCAC 1104 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCT 33116 |||| ||||| ||||||||||||||| || ||||| |||||| ||| Sbjct 1103 TGGCAGCAAAGAACGCCAATACATGTGATACAAAATGTTTTTCTTCT 1057 >seq59245 Length=1049 Score = 132 bits (146), Expect = 6e-26 Identities = 220/316 (70%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || ||||| || || ||| || || | || |||| || | |||||| | ||||| Sbjct 498 CCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCCTTCAGGGTATCAAAAATGCCT 557 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || || ||||| || |||| | ||||| || || |||||||| | | ||| Sbjct 558 TCAATGCTATCGTCTTTCATAGCGACAAGAAAGCAACTGGACATTTGTGGTCTGGGAGTA 617 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 || | || || || ||||| | ||||||||||||||| ||||| | || |||||| Sbjct 618 CCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATCCATCAGACATTAAATTGTAA 677 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAACA 63587 || |||||||| | || |||| |||| | || ||||| || || || | ||| | || Sbjct 678 GTTTCAATAGCGGCATCAATAT--CATTCATGTGTATTCCAACAGCCACTCTCATCAGCA 735 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 |||| || ||||||||||| | | | ||| ||| ||| ||| || || |||| | | Sbjct 736 TGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCAAATACGACCTTTCAAGTG 795 Query 63648 TTTTAAAACCAAAATA 63663 |||| || |||||||| Sbjct 796 TTTTGAAGCCAAAATA 811 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 ||||| || ||||||||||| | ||| | || | ||||| || || ||||| || Sbjct 102 ATATCTGAGTGCCACGGTTCGAGGTAAACAGCAAATGAACCAGGGCGCTTATTTCCACCT 161 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCATTGGA 63291 ||||||| |||||| | ||||| || || |||||||||| |||| |||| ||||| || Sbjct 162 TGATCTACGTATCTGGACGTGTTGTTGTACACTCTCAACAACGGAACTAAT-CCATTTGA 220 Query 63292 TGTACCATTGGTC 63304 | | ||||| ||| Sbjct 221 TATTCCATTAGTC 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633085135982000