Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enteromyxum_20leei_20[genbank_20GCA_5F001455295.1_202015-12-02] 69,045 sequences; 67,975,573 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq22640 188 8e-43 seq25167 147 2e-30 seq59245 127 2e-24 >seq22640 Length=3951 Score = 188 bits (208), Expect = 8e-43 Identities = 380/560 (68%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 47882 TATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGC 47941 |||||| ||||| || || ||||| |||| | || || || | | ||||||| Sbjct 1372 TATAGAAGCTAGGTTGCACACAGCGGTTTCATCTTTATCAGAGTACTCAACAATTTCAGT 1313 Query 47942 ACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA---TTNNNNTTGTTACA 47998 ||| | ||| | | ||||| || | ||||| |||||| || ||| || Sbjct 1312 ACACAAATTGCTTGACTTGATCACTCCAACATTTTTTTGATTAGATTTGCGATTG---CA 1256 Query 47999 TGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTT 48058 ||| || ||||||| ||| | || | ||||||||||| |||| ||| | ||||| Sbjct 1255 TGCATCTTTGTAAACCATGTATGGCATACCAGTTTCTATTTGAGCTTCCAAAATAGAAAA 1196 Query 48059 CCAAACAGTCCTAGCCTTTATAA-CAGCTC-TAGCTTTATTATCATGTTCGTATTTAGTA 48116 ||| | || | ||| || || | || || | || || || ||| || || || Sbjct 1195 CCACAAAGCCTGAGCGTTAATTTGCTTCTTATAACGTTTTT--CAGATTCATACTTTGTG 1138 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 || | ||| | |||||| || || || || | ||| || || |||||| |||||| Sbjct 1137 TAAAGCTTATTAAATTCTTCACCGTAGCAATCAGATAATCCTGGTGATTCATGTGGACAC 1078 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 ||||| ||||| | |||| ||||||||| | |||||||| ||| |||||||| | Sbjct 1077 ATCAAAGACCACTTTTCATTATTTTTTACACGCTCCATAAATAAATCCGGTATCCATAAT 1018 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| || || |||| | || |||||| ||||| | || || | | ||| | | Sbjct 1017 GCATAAAACAAGTCTCTAGCGCGTACTTCTTCGCTGCCAGTGTTTTTTCTCAATTCTAAA 958 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || ||||||| | ||||| ||||| | || | || | | ||| || || ||| Sbjct 957 AATTCTTTTATATCTGAGTGCCACGGTTCGAGGTAAACAGCAAATGAACCAGGGCGCTTA 898 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || || |||||||||| ||||||| || ||||| || ||||| |||| || || | Sbjct 897 TTTCCACCTTGATCTACGTATCTGGACGTGTTGTTGTACACTCTCAACAACGGAACTAAT 838 Query 48417 CCATTTGATATACCATTGGT 48436 ||||||||||| ||||| || Sbjct 837 CCATTTGATATTCCATTAGT 818 Score = 138 bits (152), Expect = 1e-27 Identities = 474/733 (65%), Gaps = 49/733 (7%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || |||||||| | ||| ||||| | | | ||| || | ||| ||||| ||||| Sbjct 2333 TCAACAGTAAATTGAATAGGATTTGCACCGGGTCTTGATCTAAGATAGTACATTCCAGTT 2274 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTA--GAATAACTAGGTT 47094 || | || | ||||||| || |||||||| ||||| | ||| || | | ||||| Sbjct 2273 TTGAGGCCCTTATTCCATCCGTAAAAATGCATGCTAGTAAGTTTTCCGACTGA--AGGTT 2216 Query 47095 CTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCA 47154 | | ||| || || | ||||||||| ||||||||||| | ||| | |||||| |||| Sbjct 2215 CAGCCATAAAAACGTTGAAAGATTGACTTTGATCAATAAAAGGACCACGATCAGCAGCCA 2156 Query 47155 TATCTAAAATAACCCTTT---GTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 |||| ||||| ||| || | |||||| |||||||||| ||| |||| Sbjct 2155 TATC---AATAAGTGTTTTCATTGAAAGTTCCCATGAGGTTTTATAAAGAGCTTTTATGT 2099 Query 47212 CTTCTGG---GAGATTAGTATT-TTGAATAGATCCTCCgttttc--tataat-tttg--- 47261 | || || | || | | || | || | || ||| || || ||| ||| Sbjct 2098 CGTCAGGAATGCAATCAATGTTCTAAAAAAAATAAAGTGTTGTCATTAAAATACTTGAAC 2039 Query 47262 --------ttttttaattcatttga---ccaaagttttcgtt-cagttaatgtttttaa- 47308 ||| | ||| |||| || |||| || ||| | || |||| Sbjct 2038 GGAGCCAAAATTTGCAATCAGTTGATTTTTAACACTTTCATTCCAGATGTTGAGATTAAC 1979 Query 47309 AAGAT----GAGGA--------TTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 ||| | || | || ||||| |||||||| ||||||| || | || | Sbjct 1978 AAGGTCTTGCAGCAAATACTTGTTCACAATCTGAAATTCCCCAGATAAAACACGTCGATT 1919 Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 ||| ||||| ||||||| ||||| |||||||| || ||||| | ||||||| ||||| Sbjct 1918 ATAAATATTTGTTGTATAAGGTTCAATAGATTCGTTGTTTCCCATTATTTGAGACGTTGA 1859 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNN 47476 || |||||||| | ||||| ||| | |||||||| || |||| || | || | Sbjct 1858 CGCCGTAGGCATTGGTGCAATTAAAAGACTATTTCTAACACCATGTTCCTTGATTTTAGC 1799 Query 47477 NNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAG 47536 |||||||||||| | ||| | ||| || |||||| | |||||||| | Sbjct 1798 TTTCAATGATTTCCAATCCCATAAATCAGTAGGAGTAATATTCCACATGTCATATTGTAA 1739 Query 47537 AATTCCTTTACTTATCGGAGAACCATTATA--TGTTTTATAAGGACCGTATAGTTTAGCG 47594 || |||| | ||| || ||| | || || || |||| | || | | ||| || Sbjct 1738 GATACCTTGAGATATGGGTGAATCTTTGTAAGTGGAGTATACG--CCATGTTCTTTTGCT 1681 Query 47595 AGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGA 47654 |||||| | || | ||| || |||||||||||||||||||| || || | Sbjct 1680 TCTTCACATGAAGACTCAAGTGCGGCATGATATATTGTTTCAAATATTTCAATATTCAAC 1621 Query 47655 TTCCTTGCTTCTG 47667 ||||| ||||||| Sbjct 1620 TTCCTGGCTTCTG 1608 Score = 127 bits (140), Expect = 2e-24 Identities = 223/321 (69%), Gaps = 8/321 (2%) Strand=Plus/Minus Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAG--AGCACACCGTTTAAGGGTATCATAAA 48537 || || || ||||| || ||| || || || |||| || || ||||||||| ||| Sbjct 555 ATGCCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCC--TTCAGGGTATCAAAAA 498 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 | ||||| || ||||| ||| ||||| | ||||| ||||| |||||||| || Sbjct 497 TGCCTTCAATGCTATCGTCTTTCATAGCGACAAGAAAGCAACTGGACATTTGTGGTCTGG 438 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 ||| || || || || || || || | || ||| |||||||| || || | || | Sbjct 437 GAGTACCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATCCATCAGACATTAAAT 378 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA--CCTATAGATACACGCAT 48715 | || ||||||||| | | ||| ||||| ||| |||| || || | || || | ||| Sbjct 377 TGTAAGTTTCAATAGCGGCATCAATATC--ATTCATGTGTATTCCAACAGCCACTCTCAT 320 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 | ||| | ||| ||||||||||||| | | || ||| ||| | ||| || |||| Sbjct 319 CAGCATGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCAAATACGACCTTTC 260 Query 48776 CAATGTTTTAAAACCAAAATA 48796 | |||||| || |||||||| Sbjct 259 AAGTGTTTTGAAGCCAAAATA 239 >seq25167 Length=1585 Score = 147 bits (162), Expect = 2e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||||| | ||| | || ||||| | |||||||||||||| ||||||||||| || Sbjct 1255 TGGATCTTTGATATAAGTGTCGATCAACAGGCTGTACATTTCTGAGTGAATATTTTCAAT 1196 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCT 19340 || || || | ||| ||||| ||||| |||| | ||||||||||| ||| | Sbjct 1195 TGCAATTTGCAGTCCATAAAAGCATCTGACTTCAGGCCATTGTACTTCACTTGCAAAACA 1136 Query 19341 TTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTT 19400 ||| ||||| |||||||| || || |||||||| || ||||| || || ||||||||| Sbjct 1135 TTCAACCAAGTTTTCATTTACAATACCATCACTGGCAGCAAAGAACGCCAATACATGTGA 1076 Query 19401 AATAAAATGTTTTTCATCT 19419 | |||||||||||| ||| Sbjct 1075 TACAAAATGTTTTTCTTCT 1057 >seq59245 Length=1049 Score = 127 bits (140), Expect = 2e-24 Identities = 223/321 (69%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAG--AGCACACCGTTTAAGGGTATCATAAA 48537 || || || ||||| || ||| || || || |||| || || ||||||||| ||| Sbjct 495 ATGCCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCC--TTCAGGGTATCAAAAA 552 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 | ||||| || ||||| ||| ||||| | ||||| ||||| |||||||| || Sbjct 553 TGCCTTCAATGCTATCGTCTTTCATAGCGACAAGAAAGCAACTGGACATTTGTGGTCTGG 612 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 ||| || || || || || || || | || ||| |||||||| || || | || | Sbjct 613 GAGTACCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATCCATCAGACATTAAAT 672 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA--CCTATAGATACACGCAT 48715 | || ||||||||| | | ||| ||||| ||| |||| || || | || || | ||| Sbjct 673 TGTAAGTTTCAATAGCGGCATCAATATC--ATTCATGTGTATTCCAACAGCCACTCTCAT 730 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 | ||| | ||| ||||||||||||| | | || ||| ||| | ||| || |||| Sbjct 731 CAGCATGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCAAATACGACCTTTC 790 Query 48776 CAATGTTTTAAAACCAAAATA 48796 | |||||| || |||||||| Sbjct 791 AAGTGTTTTGAAGCCAAAATA 811 Score = 109 bits (120), Expect = 6e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATT 48271 |||||||| || |||||||| | || ||| || || |||| | || |||||| | Sbjct 8 CATAAATAAGTCAGGTATCCATAATGCATAAAACAAGTCTCTAGCGCGTACTTCTTCGCT 67 Query 48272 GCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 ||| | || || | | ||| | ||| || ||||||| | ||||| ||||| | || Sbjct 68 GCCGGTGTTTTTTCTCAATTCTAAAAATTCTTTTATATCTGAGTGCCACGGTTCGAGGTA 127 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 | || | | ||| || || ||||| || |||||||||| ||||||| || ||||| Sbjct 128 AACAGCAAATGAACCAGGGCGCTTATTTCCACCTTGATCTACGTATCTGGACGTGTTGTT 187 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 || ||||| |||| || || | ||||||||||| ||||| || Sbjct 188 GTACACTCTCAACAACGGAACTAATCCATTTGATATTCCATTAGT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561623664973800