Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enteromyxum_20leei_20[genbank_20GCA_5F001455295.1_202015-12-02] 69,045 sequences; 67,975,573 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq22640 194 4e-44 seq1365 116 9e-21 seq61178 100 7e-16 seq48914 87.8 4e-12 >seq22640 Length=3951 Score = 194 bits (214), Expect = 4e-44 Identities = 337/484 (70%), Gaps = 7/484 (1%) Strand=Plus/Plus Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| |||| | ||||| |||| ||||| | |||| |||| | | ||| || ||||| Sbjct 830 TCAAATGGATTAGTTCCGTTGTTGAGAGTGTACAACAACACGTCCAGATACGTAGATCAA 889 Query 110736 GGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 ||||| |||| | ||| ||||||||| | || |||||||| ||||| ||||||||| Sbjct 890 GGTGGAAATAAGCGCCCTGGTTCATTTGCTGTTTACCTCGAACCGTGGCACTCAGATATA 949 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 ||||| |||||| | | ||||| || |||||| | | || | || || Sbjct 950 AAAGAATTTTTAGAATTGAGAAAAAACACTGGCAGCGAAGAAGTACGCGCTAGAGACTTG 1009 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 ||||||||| | ||||| | |||||||| ||| | ||||| || | |||| | |||| Sbjct 1010 TTTTATGCATTATGGATACCGGATTTATTTATGGAGCGTGTAAAAAATAATGAAAAGTGG 1069 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 ||| | |||||||| ||| || || || |||||||| || || |||| ||| | Sbjct 1070 TCTTTGATGTGTCCACATGAATCACCAGGATTATCTGATTGCTACGGTGAAGAATTTAAT 1129 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTT-TCGCAAACAAATTCCAGCTCAAGA 111031 | |||||| ||| |||||| ||| | ||| | || |||||| ||||| | Sbjct 1130 AAGCTTTACACAAAGTATGAATCTGAAAA-ACGTTATAAGAAGCAAATTAACGCTCAGGC 1188 Query 111032 ACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAA 111091 | ||||| || | ||| | ||| | |||||||| | || || || | || || Sbjct 1189 TTTGTGGTTTTCTATTTTGGAAGCTCAAATAGAAACTGGTATGCCATACATGGTTTACAA 1248 Query 111092 AGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATT 111150 |||| ||| ||||||||||||||||||| ||| | ||| || ||||| || |||| Sbjct 1249 AGATGCATGC-AATCGCAAATCTAATCAAAAAAATGTTGGAGTGATCAAGTCAAGCAATT 1307 Query 111151 TGTG 111154 |||| Sbjct 1308 TGTG 1311 >seq1365 Length=10059 Score = 116 bits (128), Expect = 9e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 305357 CATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTA 305416 || |||||||||||||||| || | ||||||||| | || | | || ||||||||| Sbjct 8775 CACAAAATGTCTATGATGGGACACAGAGTCAAAGTTCTTCCTTGGTCTACTTTTCGATTA 8716 Query 305417 AATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCAT 305476 || | |||| ||||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct 8715 AACCTCAGTGTCACTACGCCTTACAATGCCGATTTTGATGGCGATGAAATGAATATGCAC 8656 Query 305477 GTACCTCAA 305485 ||||| ||| Sbjct 8655 GTACCACAA 8647 >seq61178 Length=12939 Score = 100 bits (110), Expect = 7e-16 Identities = 255/379 (67%), Gaps = 22/379 (6%) Strand=Plus/Plus Query 279780 AAGA-ACAAACTAATGTGACTTGTGAAGAATTTATTGATAAAGAACTGATCCATTTTTCT 279838 |||| ||||| ||||| |||| | |||| ||||| | | ||| | | || ||||| Sbjct 8645 AAGATACAAAA-AATGTCACTTTTCAAGATTTTATCAACATGGAATTAGTTCAGTTTTCA 8703 Query 279839 AATTATGATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCT--TCACAGC 279896 ||| |||| ||| | |||||||| | | |||||||| || |||||| ||| || Sbjct 8704 AATGCTGATAATCAAAGAGCTATTCCTAACATTATGGATGGATTAAAACCTAGTCAAAGA 8763 Query 279897 GTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGT 279956 | |||||| | | |||| |||||| | ||| ||||| |||||||| | Sbjct 8764 AAAGTTTTATATACCAT-GTTT-AAAAGATATGAAAAAAAAGAAATCAAAGTTGCTCAAT 8821 Query 279957 TAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCG----TCTCTTCAA 280012 |||| ||| |||||| ||| ||| |||||||| |||||||| | |||| | Sbjct 8822 TAGCTGGTGCTGTTTCTGAATTGACAGCATATCATCATGGTGAAGCAAGCATGGCTTCGA 8881 Query 280013 GGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCT---GCTT 280069 ||||| | || ||||| ||||||||| | | | || || ||||| | |||| Sbjct 8882 ----CTATTATTGGCCTTGCTCAAGATTTTGTAGGTAGTAATAATATAAATTTATTGCTT 8937 Query 280070 TCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGAAAAGATCATGGTAGTGCTCGT 280129 | | |||||| |||||| | | || |||||||||| || |||||||||| Sbjct 8938 CCTCT---TGGTCAGTTTGGTAGTAGGCTTAGTGGTGGAAAAGATGCTGCTAGTGCTCGT 8994 Query 280130 TACATACATACATGTCTTT 280148 || ||| ||| |||||| Sbjct 8995 TATATATTTAC--GTCTTT 9011 >seq48914 Length=4395 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 |||||| |||| || | |||||||||| || |||||||| ||||||||||| || ||| Sbjct 3351 ACATTTAGATTTAACGAGTGTGCTTGTACTCCATATAATGCTGATTTTGATGGTGACGAA 3410 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||||| ||| |||||||| Sbjct 3411 ATGAATATTCATTTACCTCAA 3431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185762899037245