Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AC_000006.1 Length=35100 Score E Sequences producing significant alignments: (Bits) Value seq556156 158 3e-34 >seq556156 Length=560 Score = 158 bits (174), Expect = 3e-34 Identities = 207/280 (74%), Gaps = 9/280 (3%) Strand=Plus/Minus Query 6445 CGCGGGCGGCCATTGCTCGCTCGTAGGGGTTGAGGGGCGGACCCCACGGCATGGGATGCG 6504 |||||||| | | || |||||||| |||||||| || |||||||| |||||||| | Sbjct 278 CGCGGGCG-CAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGGGTGG 220 Query 6505 TGAGGGCGGAGGCGTACATGCCGC----AAATGTC-GTAAACATAGATGGG-CTCCGAGA 6558 | || ||||||||||||||| | | ||||||| ||||| || ||| ||| || Sbjct 219 TNAGCGCGGAGGCGTACATGGCCCGACTAAATGTCCGTAAAACGTGAGGGGGCTCTCTGA 160 Query 6559 AGATGCCGATGTTGGTGGGATAACAGCGCCCCCCGCGGATGCTGGCGCGCACGTATTCAT 6618 || || | | ||||| || || | || ||||||||||||||||||||||| || | Sbjct 159 GTATTCCAAGATATGTGGG-TAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGT 101 Query 6619 ACAACTCGTGCGAGGGGCCAAGAAGGCCGGGGCCGAAATTGGTGCGCTGGGGCTGCTCGG 6678 | | ||||||||||| | || ||| |||| |||| ||| | || ||||||||| | Sbjct 100 ATAGTTCGTGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTG 41 Query 6679 CGCGGAAAACAATCTGGCGAAAGATGGCGTGCGAGTTGGA 6718 | ||| || | ||||| | |||||||| || |||||||| Sbjct 40 CTCGG-AAGCTATCTGCCTGAAGATGGCATGTGAGTTGGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111349594630724