Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AC_000018.1 Length=35514 Score E Sequences producing significant alignments: (Bits) Value seq556156 125 2e-24 >seq556156 Length=560 Score = 125 bits (138), Expect = 2e-24 Identities = 194/272 (71%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 6512 GCCAGCGCGCGCTCATAGGGGTTAAGAGGGGTGCCCCAGGGCATGGGGTGGGTGAGCGCG 6571 || ||||||||||| || ||||| || |||| ||||| ||||||||| ||| |||||| Sbjct 271 GCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGGGTGGTNAGCGCG 212 Query 6572 GAGGCATACATGCCAC----AGATAT-CGT-ATACATAGAGGGGCTCTTCGAGGATGCCG 6625 ||||| |||||| | | | || | ||| | || | |||||||| ||| || || Sbjct 211 GAGGCGTACATGGCCCGACTAAATGTCCGTAAAACGTGAGGGGGCTCTCTGAGTATTCCA 152 Query 6626 ATGTAAGTGGGATAACAGCGCCCCCCTCTGATGCTTGCTCGCACATAGTCATAGAGTTCA 6685 | || ||||| || || | || || | |||||| || ||||| || || || ||||| Sbjct 151 AGATATGTGGG-TAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTATAGTTCG 93 Query 6686 TGTGAGGGGGCGAGAAGACCCGGGCCCAGATTGGTGCGGTTGGGTTTTTCCGCCCTGTAA 6745 || ||||| ||||| || | || || || ||| | ||| ||| | || || | | || Sbjct 92 TGCGAGGGAGCGAGGAGGTCGGGACCGAGGTTGCTACGGGCGGGCTGCTCTGCTC-GGAA 34 Query 6746 ACGATCTGGCGAAAGATGGCATGGGAATTTGA 6777 | ||||| | ||||||||||| || || || Sbjct 33 GCTATCTGCCTGAAGATGGCATGTGAGTTGGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112664372229752