Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq250674 232 7e-56 seq620319 102 8e-17 seq407716 87.8 2e-12 >seq250674 Length=71378 Score = 232 bits (256), Expect = 7e-56 Identities = 578/869 (67%), Gaps = 8/869 (1%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 ||||||||| |||| || || | ||| ||| |||| ||||| ||||| ||||| || | Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGT 16783 || || || ||||| || ||||| ||||| | | | | | ||| ||| || || Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 16784 TCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTA-ATTCGCAGTTCAT 16842 || | || |||||| || |||||||||||||| || | ||| | | | || ||| || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGC-GTTGAT 3509 Query 16843 TCCTATAAGA-CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 || || ||| || | | ||| || ||||| || ||| | || || |||| |||| Sbjct 3508 CCCGATTAGAGCGCATTGAAAG-GCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTT 3450 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 | |||| || | || | | ||| ||| ||| | || || | | | Sbjct 3449 CATTAACCATGTGATAAATATGAGACGTATCTGGTTTATTTTTTACATACTTGTATAGGA 3390 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 |||| || ||||| ||||| |||||||| || | || || |||||||| | ||| || | Sbjct 3389 GACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACGTTA 3330 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 | ||||||| || |||| || |||| ||||||||| || || |||| || ||||| | Sbjct 3329 AACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAAAAA 3270 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141 | || || || || ||||| || | | || | | | || ||||| Sbjct 3269 AAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTGTTGT 3210 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 ||||| | |||| | ||||||| | || || || || || || | Sbjct 3209 CTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATTGCAT 3150 Query 17202 TAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACA 17261 | | || | | ||||| | || ||| ||||| ||||| || || |||| Sbjct 3149 TTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGAATACA 3090 Query 17262 TTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTA 17321 ||||||| || || || |||||||| ||||||||||| || ||| ||||| |||| | | Sbjct 3089 TTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTCTGGAA 3030 Query 17322 TTTGAACTTCCACG--TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 ||||||||| |||| || || ||| | || ||||||||| || || || || || || Sbjct 3029 TTTGAACTT-CACGACTA-AAGCGTAGCATTAAATTTTCGTTTACAATACCATCACTGGC 2972 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCA 17439 || ||||| || || | | | ||| |||| | |||| || || ||| | |||| Sbjct 2971 AGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCAAGCCA 2912 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 || |||| ||||| || | |||||||||||||| |||||| |||||||| || Sbjct 2911 ATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCACTGCTTT 2852 Query 17500 TTTATACATATTCCAAATATCATTGTATT 17528 |||||||| | ||| | ||| | |||| Sbjct 2851 CTTATACATTTCCCATACATCGTGATATT 2823 >seq620319 Length=78974 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||||||||||||||| || || || | |||||||| ||| | ||||| Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | ||||| || || || || || || ||||| ||||| || ||||| |||| ||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 17106 C 17106 | Sbjct 15560 C 15560 >seq407716 Length=13296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||||||||||||||| || || || | || ||||| ||| | |||| Sbjct 4584 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCT 4643 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | ||||| || || || || || || || || ||||| || ||||| || | ||||| | Sbjct 4644 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATG 4703 Query 17106 CGATTA 17111 ||| || Sbjct 4704 CGACTA 4709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513424183838280