Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq250674 273 2e-68 seq407716 113 5e-20 seq620319 109 6e-19 >seq250674 Length=71378 Score = 273 bits (302), Expect = 2e-68 Identities = 594/881 (67%), Gaps = 16/881 (2%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 ||||||||| |||| || || | ||| ||| |||| || || ||||| || || || || Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGT 16021 || || ||||||||||| ||||| ||||| | | | | | |||| ||| || || Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 16022 TCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTAAT 16080 || | || |||||| || |||||||||||||| || | ||| | ||| || || || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG-TTGAT 3509 Query 16081 TCCTATAAGT-CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 || || || || | | ||| || | ||||| |||| | ||| ||| |||| |||| Sbjct 3508 CCCGATTAGAGCGCATTGAAAG-GCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTT 3450 Query 16140 CTTTAA-----TGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAA 16194 | |||| ||||| || ||| | | ||| ||| |||| | || | Sbjct 3449 CATTAACCATGTGATAAATATGAGACGTATCT-----GGTTTATTTTTTACATACTTGTA 3395 Query 16195 CATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAA 16254 | |||||||| || || ||||| | ||| || || | || || |||||||||| ||| Sbjct 3394 TAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAA 3335 Query 16255 AGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGA 16314 ||||| || |||| ||| |||| || |||| ||| ||||| |||||||| | ||||| Sbjct 3334 CGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGA 3275 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTT 16374 ||| || || || || || ||||| || | | || | | | || || Sbjct 3274 AAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATT 3215 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || ||||| | | |||||| ||||||| || ||||| || || || Sbjct 3214 GTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGAT 3155 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 || || | ||| | | ||||| | ||| ||| ||||| || ||||| | Sbjct 3154 TGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGA 3095 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 |||||||| || || || || || ||||| |||||||||||||||||| |||| | || Sbjct 3094 ATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTC 3035 Query 16555 CGCTATTTGTACTTCCACGTA-AAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | ||||| ||||| ||| ||| ||| | | || || || || ||||| |||| Sbjct 3034 TGGAATTTGAACTTC-ACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATCAC 2976 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 | ||||||||||| || || | || | ||| |||| | |||| ||| || ||| | Sbjct 2975 TGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCAA 2916 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||||||| |||| ||||| || | |||||||||||| | |||||| ||||||| Sbjct 2915 GCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCACTG 2856 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGA 16774 | || |||||||||| ||| | ||| | |||| || ||| Sbjct 2855 CTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGA 2815 >seq407716 Length=13296 Score = 113 bits (124), Expect = 5e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 16220 AGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGT 16279 ||| | |||||||||||||||||||||||||| || || | || |||||| ||| | Sbjct 4580 AGTACCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTC 4639 Query 16280 TTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCA 16339 ||||| |||||||| || |||||||| || || || ||||| || ||||| |||| ||| Sbjct 4640 TTCTTCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCA 4699 Query 16340 AAAGCGATTA 16349 || |||| || Sbjct 4700 AATGCGACTA 4709 >seq620319 Length=78974 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 16220 AGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGT 16279 ||| | |||||||||||||||||||||||||| || || | || |||||| ||| | | Sbjct 15684 AGTACCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTT 15625 Query 16280 TTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCA 16339 ||||| |||||||| || |||||||| || || || ||||| || ||||| || | ||| Sbjct 15624 TTCTTCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCA 15565 Query 16340 AAAGC 16344 || || Sbjct 15564 AATGC 15560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507341808959720