Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq250674 286 4e-72 seq620319 134 2e-26 seq407716 104 3e-17 >seq250674 Length=71378 Score = 286 bits (316), Expect = 4e-72 Identities = 604/898 (67%), Gaps = 25/898 (3%) Strand=Plus/Minus Query 23835 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 23894 || ||||||||||| ||||| || || ||| |||| ||||||||||| || ||||| || Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAAT 23954 || || |||||||| || || |||||||| ||||||||| | | | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 23955 TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCA---TTTCACAATTC 24011 ||| | | |||||| || ||||| || ||||| | ||||| || | || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG---TTG 3511 Query 24012 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 24071 || || || || | ||| || | || | ||||| | |||||| || || Sbjct 3510 ATCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCT 3451 Query 24072 TC--------TGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTT 24123 || ||| |||| | || || || ||| ||| || || || | Sbjct 3450 TCATTAACCATGTGATAA-ATATGAGAC-GTATCT------GGTTTATTTTTTACATACT 3399 Query 24124 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 24183 | | | | ||| || ||||| || || | ||||| || | ||| || | |||||||| Sbjct 3398 TGTATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGG 3339 Query 24184 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 24243 |||||| | ||||||| | || | |||||| ||||||||||||| ||||| | | Sbjct 3338 CAAACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCAC 3279 Query 24244 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC 24303 | ||||| ||||| ||||| || | ||||| |||| ||| | ||| ||| || Sbjct 3278 CCGAAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTG 3219 Query 24304 T---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 | || | |||||| | | ||||| | || || |||| | ||| || ||| || Sbjct 3218 TATTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCT 3159 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 24420 | || ||||| | | || | ||||| || |||||| || || || || |||| | Sbjct 3158 CGATTGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCA 3099 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 | ||||||||| ||||| || ||||| ||||| || |||||||| ||||| ||| Sbjct 3098 GCGAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGA 3039 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 | || | ||| || ||||| || ||| ||| ||||||||| || || || || | Sbjct 3038 CTTCTGGAATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCAT 2979 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 24600 ||||||| |||||||| || || || | ||||||| | |||| || || || Sbjct 2978 CACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGAC 2919 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 | |||||| || | |||||||| | |||||||||||| ||||||||| ||| Sbjct 2918 CAAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCA 2859 Query 24661 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 |||| || |||||||| | ||| | || ||||||| ||||||| ||| |||||| || Sbjct 2858 CTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCT 2801 >seq620319 Length=78974 Score = 134 bits (148), Expect = 2e-26 Identities = 164/223 (74%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| || || | ||||||||| || ||||||||||||||||| || | || | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || |||| ||||| || ||||| ||||| ||||| ||||| || ||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 24333 ||| | ||| || || | || |||| ||| ||||| || | ||||| | | Sbjct 15560 CAACTACCCTTGTACCGAAATCAGCCTTGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 15501 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 ||||||| ||||||| || | ||||| ||||| || || || Sbjct 15500 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 15458 >seq407716 Length=13296 Score = 104 bits (114), Expect = 3e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 ||||||||| || || ||||||||||||||||| || ||||| || ||| || || | Sbjct 6538 ATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATGAAGTG 6597 Query 24581 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 24640 || || | || || || ||||| | | ||| || || | || || ||||| Sbjct 6598 CTTCTCATTCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGACCTCTTC 6657 Query 24641 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 24700 | | ||||| || || ||||| || || || ||||| | ||||||||| ||||| || || Sbjct 6658 CGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATACTGGAT 6717 Query 24701 TGGAAAAATAACAAATCTATTTGGATT 24727 || || || ||||| || |||| || Sbjct 6718 GGGGAAGATGACAAACCTCCTTGGGTT 6744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588993564832080