Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq34585 113 4e-20 seq156656 87.8 2e-12 >seq34585 Length=75490 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||| | ||| | ||| |||||||| || || || ||||| | |||||| || ||||||| Sbjct 7705 CACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTC 7646 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||| || || ||| | || || | |||||| || || | ||||||||||| Sbjct 7645 GAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTCCTTGTCCTG 7586 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 ||||||| |||||| | ||| ||||||| |||||| || | || |||||||| Sbjct 7585 GATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCTACCTCTAATGTGATGGTCTT 7526 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || | || || ||||| || ||||| Sbjct 7525 GCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||| | ||| | ||| || ||||| || || || ||||| | |||||| || ||||||| Sbjct 7021 CACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTC 6962 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||| || || ||| | || || | |||||| || || | ||||||||||| Sbjct 6961 GAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTGTCCTG 6902 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 ||||||| |||||| | ||| ||||| | |||||| || | || |||||||| Sbjct 6901 GATCTTTGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTACCTCTAGTGTGATGGTCTT 6842 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || | ||| || || || || ||||| Sbjct 6841 GCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||| | ||| | || |||||||| || || || ||||| | ||| || || | ||||| Sbjct 6793 CACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCCTC 6734 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||| ||||| || | || |||| |||||| || || | ||||||||||| Sbjct 6733 AAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTG 6674 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| ||||| | | | ||||||| || || || | || |||||||| Sbjct 6673 GATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACCTCAAGTGTGATGGTCTT 6614 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCT 21184 ||| || | ||||| ||||| || ||||| ||||||| Sbjct 6613 GCCAGTGAGAGTTTTCACAAAGATCTGCATGATGAATCT 6575 >seq156656 Length=67780 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| || || | ||| | ||||||||||| |||||||| ||||| | | Sbjct 29890 CCACCACGGAGCCTCAGTACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAC 29831 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 ||||| || | || |||||||| ||||| ||| | || || | ||||||||| Sbjct 29830 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 29778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418980651705836