Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq407716 140 3e-28 seq620319 136 4e-27 seq34585 131 2e-25 seq133437 109 6e-19 seq496440 102 8e-17 seq320776 93.3 4e-14 seq156656 86.0 6e-12 >seq407716 Length=13296 Score = 140 bits (154), Expect = 3e-28 Identities = 168/223 (75%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 116585 CTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGC 116644 || || |||||||| | |||| || || |||||||| || || | ||||| |||| | Sbjct 6753 CTACGAGAGAACCCAAGGAGGTTTGTCATCTTCCCCATCCAGTATCACGACATCTGGCAC 6694 Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGA- 116703 |||||||| || |||||||||||||||||||| | || ||||| ||||| |||||||| Sbjct 6693 ATGTACAAGAAAGCCGAGGCGTCGTTCTGGACGGCGGAAGAGGTCGACCTCTCCAAGGAT 6634 Query 116704 CACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGG 116762 | || | | |||| | || ||| | || ||| || |||||| ||||| ||| Sbjct 6633 CTGGAAC-ATTGGGCAAAGC-TGACGAAGAATGAGAAGCACTTCATCTCACACGTCTTGG 6576 Query 116763 CCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 | || || || ||||| |||||||||||||| || |||||||| Sbjct 6575 CATTCTTTGCAGCCAGTGACGGCATCGTCAATGAAAATCTGGT 6533 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||| | ||| || || || ||||| |||||||| |||| |||||||| || || Sbjct 5469 GGTTGAGAGATTCAGCCAAGAAGTTCAGGTTGCCGAGGCAAGGTGTTTCTACGGGTTCCA 5410 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||| || || || ||| | ||||| |||||||| || ||||||||||| ||| Sbjct 5409 GATTGCAATCGAAAACATCCACTCAGAAATGTACTCATTACTCATCGACACATAC 5355 >seq620319 Length=78974 Score = 136 bits (150), Expect = 4e-27 Identities = 167/223 (75%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 116585 CTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGC 116644 || || |||||||| | ||||||| || |||||||| || || | ||||| |||| | Sbjct 13481 CTACGAGAGAACCCAAGGAGGTTCGTCATCTTCCCCATCCAGTATCACGACATCTGGCAC 13540 Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGA- 116703 |||||||| || |||||||| ||||||||||| | || ||||| ||||| |||||||| Sbjct 13541 ATGTACAAGAAAGCCGAGGCATCGTTCTGGACAGCGGAAGAGGTCGACCTCTCCAAGGAT 13600 Query 116704 CACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGG 116762 | || | | |||| | || ||| | || ||| || |||||| || || ||| Sbjct 13601 CTGGAAC-ATTGGGCAAAGC-TGACGAAGAATGAGAAGCACTTCATCTCACATGTCTTGG 13658 Query 116763 CCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 | || ||||| || || |||||||||||||| || |||||||| Sbjct 13659 CATTCTTCGCAGCAAGTGACGGCATCGTCAATGAAAATCTGGT 13701 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||| | ||| || || || ||||| |||||||| ||||| |||||||| || || Sbjct 14795 GGTTGAGAGATTCAGCCAAGAAGTTCAGGTTGCCGAGGCACGGTGTTTCTACGGGTTCCA 14854 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||| || || || ||| | ||||| |||||||| || ||||||||||| ||| Sbjct 14855 GATTGCAATCGAAAACATCCACTCAGAAATGTACTCATTACTCATCGACACATAC 14909 >seq34585 Length=75490 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| ||||| |||||||| | || |||||| | | Sbjct 6584 ATGCAGATCTTTGTGAAAACTCTCACTGGCAAGACCATCACACTTGAGGTCGAACCTAGT 6643 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | |||| || || | ||||| || || ||||| | || ||| Sbjct 6644 GATACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGATCAG 6703 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| ||||| ||||| || || | ||||| || |||||||| Sbjct 6704 CAGCGACTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAAT 6763 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || ||||| |||||||| Sbjct 6764 ATCCAGAAGGAGTCAACACTTCATCTTGTGTTGCG 6798 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| |||||||||||||| | || || || | | Sbjct 7040 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCAAGT 7099 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||| || | ||||||||||| ||||| | || ||| Sbjct 7100 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7159 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||||| || |||| || ||||| |||||||| Sbjct 7160 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 7219 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | || || ||||| ||| Sbjct 7220 ATCCAGAAGGAGTCAACTCTTCATCTTGTG 7249 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| |||||||| | || || || ||| | Sbjct 6812 ATGCAGATCTTCGTGAAGACGCTCACTGGCAAGACCATCACACTAGAGGTAGAGCCCAGC 6871 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| | || | ||| || | ||||| || || ||||| | || || Sbjct 6872 GATACCATCGAAAACG-TGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCACCAGATCA 6930 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || || ||||| || |||| || ||||| |||||||| Sbjct 6931 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAA 6990 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| | || || ||||| |||||||| Sbjct 6991 TATCCAGAAGGAATCAACTCTTCATCTTGTGTTGCG 7026 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || |||||||||||||| | || || || | | Sbjct 7268 ATGCAGATCTTCGTGAAGACGCTAACTGGCAAAACCATCACTCTGGAGGTGGAGCCAAGT 7327 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||| || | ||||| ||||| ||||| | || ||| Sbjct 7328 GACACTATTGAAAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATCCCACCAGATCAG 7387 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||||| || |||| || ||||| ||||||||| Sbjct 7388 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAC 7447 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||| ||| | || || ||||| ||| Sbjct 7448 ATCCAGAAAGAGTCTACTCTTCATCTTGTG 7477 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||||||||| | || || || | | Sbjct 7724 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACATTGGAGGTGGAGCCGAGT 7783 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||| || | ||||||||||| ||||| | || ||| Sbjct 7784 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7843 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| ||||| || || | | ||||| ||||||||| Sbjct 7844 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGAACCCTATCTGACTACAAC 7903 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| ||| |||| || ||||| || Sbjct 7904 ATTCAGAAAGAGTCCACTCTCCATCTTGT 7932 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| | || || || ||| Sbjct 7496 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACATTAGAGGTAGAGCCCAGT 7555 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | ||| || | ||||| || || ||||| | || ||| Sbjct 7556 GATACCATCGAAAATGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCGCCAGATCAG 7615 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || ||||| || |||| || ||||| |||||||| Sbjct 7616 CAGCGTCTCATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAT 7675 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || ||||| |||||||| Sbjct 7676 ATCCAGAAGGAGTCGACTCTTCATCTCGTGTTGCG 7710 >seq133437 Length=111544 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || ||||||||||| | || || || | | Sbjct 106566 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTGGAGGTGGAGCCAAGT 106625 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || || | ||| ||||||| |||| | | ||| Sbjct 106626 GACATTATTGAAAATGTAAAGGCGAAGATCCAAGACGAAGAGGGTATCCAACCACATCAG 106685 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| |||||||| || | | ||||| ||||||||| Sbjct 106686 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGAACCCTGTCTGACTACAAC 106745 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || ||||| ||| |||| || ||||| ||| Sbjct 106746 ATTCAGAAAGAGACCACTCTCCATCTTGTG 106775 >seq496440 Length=42271 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 116760 TGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTC 116819 ||||||| ||||| |||||||| || |||||||||||||||||||| || | ||| || Sbjct 24946 TGGCCTTCTTCGCTGCCAGCGATGGAATCGTCAACGAGAATCTGGTGGAAAGATTCAGTC 24887 Query 116820 AGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | ||||| ||| | | |||||| ||| || || ||||| ||||| || |||||| Sbjct 24886 AAGAGGTCCAGATACCGGAGGCGAAGTGTTTTTATGGCTTCCAGATTGCAATGGAG 24831 Score = 93.3 bits (102), Expect = 4e-14 Identities = 174/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 |||| || ||||| || || || ||| ||||||||||||| | | |||||||| || | Sbjct 16510 GCGGTCTGATGCCAGGTCTCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTCC 16451 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCG 117233 | |||||||||||||| |||| ||| ||| | | || || ||| || | || Sbjct 16450 ACTGCGACTTTGCCTGCCTGCTCTTCTCCCATCTCCTCCACCGTCCGTCCGTCTCCCGTA 16391 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGC 117293 || |||||| || || || ||| | | ||| || ||||||| ||| || || | Sbjct 16390 TCCAAGAGATCATCGGGGAAGCAGTCCGCCTGGAGGAGGAATTCCTCAGCGACGCTCTCC 16331 Query 117294 CGGTGCGTCTGC--TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGC 117351 | || || | | ||||| | || || | |||| || |||||| |||| || || Sbjct 16330 CCGT-CGCCCTCATTGGGA-TGAACGCCGTACTCATGTGTCAGTACATCCAGTTTGTGGC 16273 Query 117352 CGACAGGCTGCT 117363 |||||||||||| Sbjct 16272 CGACAGGCTGCT 16261 >seq320776 Length=21916 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 116760 TGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTC 116819 ||||||| || || |||||||| || |||||||||||||||||||| || | ||| || Sbjct 20816 TGGCCTTCTTTGCTGCCAGCGATGGAATCGTCAACGAGAATCTGGTGGAAAGATTCAGTC 20757 Query 116820 AGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | ||||| ||| | | ||||| ||| || || ||||| ||||| || |||||| Sbjct 20756 AAGAGGTCCAGATACCGGAGGCCAAGTGTTTTTATGGCTTCCAGATTGCAATGGAG 20701 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 117116 GGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCAT 117175 || || ||||| || || || ||| ||||||||||||| | | |||||||| || || Sbjct 11403 GGTCTGATGCCAGGTCTCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTCCAC 11344 Query 117176 TGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTC 117235 |||||||||||||| |||| ||| ||| | | || || ||| || | || || Sbjct 11343 TGCGACTTTGCCTGCCTGCTCTTCTCCCATCTCCTCCACCGTCCGTCCGTCTCTCGTATC 11284 Query 117236 AGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCG 117295 |||||| || || || ||| | | ||| || ||||||| ||| || || || Sbjct 11283 CAAGAGATCATCGGGGAAGCAGTCCGCCTGGAGGAGGAGTTCCTCAGCGACGCTCTCCCC 11224 Query 117296 GTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGAC 117355 || || | || | || || | |||| || |||||| |||| || |||||| Sbjct 11223 GTCGCCCTCATCGGGATGAACGCCGTACTCATGTGTCAGTACATCCAGTTTGTGGCCGAC 11164 Query 117356 AGGCTG 117361 |||||| Sbjct 11163 AGGCTG 11158 >seq156656 Length=67780 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| || | |||||||| || || |||| || ||||| |||||||| || | ||| Sbjct 29766 GGCATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 29825 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||||||||| ||||||||| |||| || ||||| || Sbjct 29826 ACCCTGTCAGACTACAACATTCAGAAGGAGTCCACCCTCCATCTTGT 29872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511116309862960