Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq447969 118 7e-22 seq61311 96.9 2e-15 >seq447969 Length=52233 Score = 118 bits (130), Expect = 7e-22 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 97045 AGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCA 97104 |||||||| || ||||||| || | || |||||||||| ||||||||| ||||| || Sbjct 18388 AGAGCATCGATATGATTCAAGTAGACATGGGCATCTCCTATAGTGTGAATGAATTCGCCT 18447 Query 97105 GGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTA 97164 || | ||||| |||||||| |||||| | || || ||||||||||| |||||||| Sbjct 18448 GGTTGGAGGTCAGTTACATGGGCTATCATATATGTCAACAGAGAATAGCTGGCAATGTTG 18507 Query 97165 AAAGGCACCCCTAGTCCC 97182 || ||||| || |||||| Sbjct 18508 AATGGCACGCCCAGTCCC 18525 >seq61311 Length=60834 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 97045 AGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCA 97104 || ||||| |||||||||| || | || |||||||| | ||||||||||| || || Sbjct 50676 AGTGCATCGATGTGATTCAAGTAGACATGTGCATCTCCAATGGTGTGAATAAACTCCCCT 50617 Query 97105 GGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTA 97164 || | | ||| |||||||| ||||| | || || ||||||||||| |||||||| Sbjct 50616 GGTTGAAGGTTAGTTACATGGGCTATCATGTATGTCAACAGAGAATAGCTGGCAATGTTG 50557 Query 97165 AAAGGCACCCCTAGTCCC 97182 || ||||| || || ||| Sbjct 50556 AATGGCACGCCCAGACCC 50539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344091464013470