Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq34585 122 7e-23 seq250674 95.1 1e-14 seq133437 84.2 2e-11 >seq34585 Length=75490 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||||||||| || |||||||| || || || || ||||||||||| |||||| Sbjct 7464 GTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCA 7405 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||||||||||||||| || || || ||||||||||| || ||| || Sbjct 7404 GCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCTTT 7345 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||| | ||| ||||| | || | |||||||| || || || Sbjct 7344 ACATTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGTTTTGCCAGTTAGCGTC 7285 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 7284 TTCACGAAGATCTGCAT 7268 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | || | ||| ||||| || || || ||||| || Sbjct 6812 TACCACCACGGAGACGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAG 6753 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| |||||| ||||| || |||||| ||||||| ||||||||||| || | Sbjct 6752 ACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTG 6693 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| || || || || | ||| | ||| || | |||| Sbjct 6692 GGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGA 6633 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | || ||||| || |||||||| ||||| ||||||||| Sbjct 6632 CCTCAAGTGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCATG 6583 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || |||||||| ||||||||||| || | || | |||||||| Sbjct 7931 CAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCCTCGA 7872 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| ||||||||||||||||||| || || || ||||| |||||| | Sbjct 7871 GCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGA 7812 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | ||| | ||||| | ||| ||||| | || | ||||| | Sbjct 7811 TCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTTTTAC 7752 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || || || || |||||||| Sbjct 7751 CGGTGAGGGTCTTGACGAAGATCTGCAT 7724 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | || | || ||||| || || || ||||| || Sbjct 7724 TACCACCACGGAGACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTG 7665 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||||||||||| ||||| || ||||||||||||||||||| || | Sbjct 7664 ACAGGGTACGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCG 7605 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| || ||| ||| || | ||||| ||| || || ||| | Sbjct 7604 GGATACCTTCCTTGTCCTGGATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCTA 7545 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || ||||| || || || || ||||| |||||||| Sbjct 7544 CCTCTAATGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | || | || || || || || || ||||| || Sbjct 7040 TACCACCACGGAGACGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTG 6981 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||||||||||| |||||||| ||||||||||||||||||| || | Sbjct 6980 ACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTG 6921 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| || ||| ||| || | ||||| ||| || || ||| | Sbjct 6920 GGATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTA 6861 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || ||||| || || || || || || |||||||| Sbjct 6860 CCTCTAGTGTGATGGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || || ||||| || || || || ||||||||||| |||||| Sbjct 7236 GTTGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGCTTTCCA 7177 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||||||||||||||| || || || ||||| |||||| || ||| || Sbjct 7176 GCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGCCTTT 7117 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||| | ||| ||||| | || | |||||||| || || || Sbjct 7116 ACATTTTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTC 7057 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 7056 TTGACGAAGATCTGCAT 7040 >seq250674 Length=71378 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 45131 GGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGTC 45190 || || ||||| | | ||||| || |||| || || ||||| |||||| | || || | Sbjct 3506 GGGATCAACGCAACTCTGATGGGACAGTATATAGAATTTGTTGCCGATAGACTACTACTT 3565 Query 45191 CAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATT 45250 || | || ||| |||| || ||| || ||||| || |||||| | || ||| Sbjct 3566 GAGCTCGGATACGATAAGGTGTATAATGTTGACAATCCATTTGACTTTATGGAAAACATT 3625 Query 45251 TCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATA 45297 |||||||| ||||| |||||||||||||| | ||| || || ||||| Sbjct 3626 TCGTTGGAAGGCAAGACTAATTTTTTTGAAAGACGAGTTGGGGAATA 3672 >seq133437 Length=111544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || | |||||| ||||||||||| || || || | |||||| | Sbjct 106773 CAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCCTCCA 106714 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||||||||||||||||| || | || ||||| | |||| | Sbjct 106713 GCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCTTGGA 106654 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | ||| | |||| | ||| ||||| | || | ||||| | Sbjct 106653 TCTTCGCCTTTACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTTTTAC 106594 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || || || || || ||||| Sbjct 106593 CGGTGAGGGTCTTGACGAAGATTTGCAT 106566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430462009405132