Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq250674 313 2e-80 seq620319 89.7 5e-13 >seq250674 Length=71378 Score = 313 bits (346), Expect = 2e-80 Identities = 592/863 (69%), Gaps = 30/863 (3%) Strand=Plus/Minus Query 15940 CATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAAT 15999 ||||||||||||||| | ||||| ||||||| ||||| || || ||||| || ||||| Sbjct 3682 CATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAACGAAAT 3623 Query 16000 ATTTTCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATCGCATCCCAATTCC 16057 ||||||||||| ||||| ||||| | |||| ||| |||||| |||| | || Sbjct 3622 GTTTTCCATAAAGTCAAATGGATTGTC--AACATTATACACCTTATCGTATCCGAGCTCA 3565 Query 16058 AACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCT 16117 | | || |||||| || |||||||||||||||||| ||| | | ||| || || Sbjct 3564 AGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCGTTGATCCCG 3505 Query 16118 ATTA------ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCT 16171 |||| ||| || ||| || | ||||| || | ||||| || | ||| ||| Sbjct 3504 ATTAGAGCGCATTGAA-AGGCAT-----CCGTTAAGAATTCCTTTTCAATCTCAACAGCT 3451 Query 16172 TCAATGATTATATCTCTTACTACACTATTTAACGGAG--GGTTTAAT----AAGTGTTTA 16225 ||| | | || | || | ||| ||| | |||||| | | | || Sbjct 3450 TCATTAACCATGTGA-----TAAA-TATGAGACGTATCTGGTTTATTTTTTACATACTTG 3397 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 | | | ||| |||||||||||||||||||| || || | |||||| | ||||| | | Sbjct 3396 TATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCA 3337 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | ||| |||| | |||| ||||| | ||||||||| || ||||| | ||| Sbjct 3336 AACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCC 3277 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 ||||| || || ||||| || ||||||||||||| | || ||| | || | Sbjct 3276 GAAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTA 3217 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 || | |||||||| | | ||||| |||||||||| || || ||| || | ||| Sbjct 3216 TTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCG 3157 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 |||||||| | |||| | ||||| |||| |||| | || || || || || | Sbjct 3156 ATTGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGC 3097 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||||||| ||||| ||||| ||||| || |||||||| ||||| ||| ||| || Sbjct 3096 GAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACT 3037 Query 16586 TCGGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 || | ||||| |||||| || |||| | | | ||| |||||||| || || ||||| Sbjct 3036 TCTGGAATTTGAACTTCACGACTAAAGCGTAGC-ATTAAATTTTCGTTTACAATACCATC 2978 Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTT 16704 || || |||||||| || | | || |||||||| | |||| | ||| | || Sbjct 2977 ACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACC 2918 Query 16705 TAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAAC 16764 | ||| || | ||||| || ||||| || ||||| | |||||| || || || Sbjct 2917 AAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCAC 2858 Query 16765 AGCCTTTTTATACATTTTCCATA 16787 || || |||||||||| ||||| Sbjct 2857 TGCTTTCTTATACATTTCCCATA 2835 >seq620319 Length=78974 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | ||||| || || || || || ||||||||||| | ||| || Sbjct 15678 TCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCTTC 15619 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| || || || ||||| || ||||| ||||| || || || || |||||||||||| Sbjct 15618 AACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATGCA 15559 Query 16379 AC 16380 || Sbjct 15558 AC 15557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458828837720600