Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq250674 288 9e-73 seq620319 93.3 4e-14 seq407716 93.3 4e-14 >seq250674 Length=71378 Score = 288 bits (318), Expect = 9e-73 Identities = 610/902 (68%), Gaps = 30/902 (3%) Strand=Plus/Minus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 || ||||||||||||||||| | ||||| | ||||||| || ||||| || ||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAG 14022 || || ||||||||||| ||||||||||| || |||| | |||| ||||| | || || Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATT-GTCAACATTATACACCTTATCGTATCCGAG 3569 Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082 || | ||||| |||||| |||| || || ||||| || ||| | | || || Sbjct 3568 CTCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCGTTGAT 3509 Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142 || ||||| ||| || ||||| ||||| ||||| || ||||| || Sbjct 3508 CCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTTC 3449 Query 14143 GTTTATAATAATCGTAATAATTTCATTAGAAGGA---GG---ATATTTTAGATGTTTAAA 14196 || | || || |||| | || ||| | | || || ||||| || || | Sbjct 3448 ATTAACCAT----GTGATAAAT--ATGAGACGTATCTGGTTTATTTTTTACATACTTGTA 3395 Query 14197 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 14256 | | |||||||||||||||||| | |||||||| | ||| || |||||||| | ||| Sbjct 3394 TAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAA 3335 Query 14257 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 14316 ||||| || |||| |||| ||||||| ||||||||| ||||| || | || || Sbjct 3334 CGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGA 3275 Query 14317 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376 ||| || || || || || | ||||| || | | || ||||| |||| | || Sbjct 3274 AAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATT 3215 Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 ||| |||||| | | ||||||| | |||||||| |||| | ||| || || Sbjct 3214 GTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGAT 3155 Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14496 ||||| | ||||||| || | ||| | | | | ||| || || || || | Sbjct 3154 TGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGA 3095 Query 14497 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 ||||||||| || || || |||||||| || |||||||| ||||| || ||| |||| Sbjct 3094 ATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTC 3035 Query 14557 TGACCATTGTACCTC-TGAGTAAA----ATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 || ||| || || || |||| | | || |||||||| || || |||||| Sbjct 3034 TGGAATTTGAACTTCACGACTAAAGCGTAGCATT-----AAATTTTCGTTTACAATACCA 2980 Query 14612 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGT 14671 ||||| || |||||||| || || | || |||||| | | || |||| |||| Sbjct 2979 TCACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGA 2920 Query 14672 TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATC---AACTGTCCAAAAACTA 14728 ||||||| || || ||||| | ||| ||||| || ||| |||||| Sbjct 2919 CCAAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAAC---CCAAAATGAG 2863 Query 14729 GCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAAT 14788 || || ||||| ||||||||| |||||| || | |||| || ||| ||| ||||| Sbjct 2862 GCCACTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAAC 2803 Query 14789 CT 14790 || Sbjct 2802 CT 2801 >seq620319 Length=78974 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| || ||||||||||| || || || | ||| ||||| | ||| | ||| | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | ||||| || || ||||| || || || || ||||| |||||||| || || ||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 14346 C 14346 | Sbjct 15560 C 15560 >seq407716 Length=13296 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| || ||||||||||| || || || | ||| ||||| | ||| | || | Sbjct 4584 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCT 4643 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | ||||| || || ||||| || || || || ||||| |||||||| || |||||||| | Sbjct 4644 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATG 4703 Query 14346 C 14346 | Sbjct 4704 C 4704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478504495078280