Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq250674 197 1e-45 seq364598 120 3e-22 seq251981 114 1e-20 seq286747 98.7 9e-16 seq34585 96.9 3e-15 seq620319 91.5 1e-13 >seq250674 Length=71378 Score = 197 bits (218), Expect = 1e-45 Identities = 577/884 (65%), Gaps = 10/884 (1%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 || ||||| | | ||| ||| |||||| || | ||| | ||||| || || |||| Sbjct 2801 AGGTTTGTTCTTTATCCAATTAAATATCACGATGTATGGGAAATGTATAAGAAAGCAGTG 2860 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656 || || |||||| ||||||||| || ||||||| || | | ||||||| | Sbjct 2861 GCCTCATTTTGGGTTACCGAAGAAGTGGATTTGTCTAAAGACGTAAACGATTGGCTTGGT 2920 Query 57657 CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGAT 57716 |||| || ||| ||| |||||||| ||||||| || ||||| || || ||| Sbjct 2921 CTCACGGATGATGAAAGACATTTTATTTTGTACGTGTTAGCCTTTTTTGCTGCCAGTGAT 2980 Query 57717 GGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCG 57776 |||||||| ||||| ||||| | | | ||| | ||||| ||| | | || | Sbjct 2981 GGTATTGTAAACGAAAATTTAATGCTACGCTTTAGTCGTGAAGTTCAAATTCCAGAAGTC 3040 Query 57777 AGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTA 57836 ||| ||| || |||||||| | ||||| ||||| | ||||| |||||||||||||| Sbjct 3041 CGATACTTCTATGGATTTCAGATTGCCATGGAAAATATCCATTCCGAAATGTATTCGCTG 3100 Query 57837 CTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAA 57896 || ||||| |||||||| || || | | | |||| || | || || ||||| Sbjct 3101 CTGATCGAAACGTACGTAAAAGATTCCAAACAAAAACAACATTTGATAAATGCAATCGAG 3160 Query 57897 ACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG 57956 ||| || || || || ||| | ||| || | | |||||| | | | || Sbjct 3161 GAAATTCCGTGTATTCAAAAAAAAGCAAAATGGGCATTAGACTGGATAGACAACAATACA 3220 Query 57957 GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGC 58016 || | || | | || | || || |||| || ||||| || || |||||||| Sbjct 3221 GCAAGTTTTGGTACCCGCCTTGTTGCATTTGCCGTGGTGGAAGGCATTTTTTTTTCGGGT 3280 Query 58017 AGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC 58076 ||||| || ||||||||| | || || | || ||||||| | |||||| | Sbjct 3281 GCGTTTGCTGCCATATTTTGGCTAAAAAAGAGAGGTAAATTGCCCGGTTTAACGTTTGCC 3340 Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 ||||| ||||| ||||| ||||| | ||| |||||||||||| || | ||| Sbjct 3341 AACGAACTGATAAGTCGCGATGAGGGATTGCATTGTGATTTTGCGTGTCTCCTATACAAG 3400 Query 58137 CACATTGTCAATAAACC-GACGCGGGATCGCATCTT--GGACATTATCACCGAGGCGGTC 58193 | | |||||||| || || || ||| || |||| | | || || || Sbjct 3401 TATGTAAAAAATAAACCAGATACG---TCTCATATTTATCACATGGTTAATGAAGCTGTT 3457 Query 58194 GCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAAT 58253 | ||| ||||| || || | || || ||| | | || | |||| || ||| Sbjct 3458 GAGATTGAAAAGGAATTCTTAACGGATGCCTTTCAATGCGCTCTAATCGGGATCAACGCA 3517 Query 58254 GATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTG 58311 | ||||| | |||| || || ||||||||||| ||||| | || || || ||| Sbjct 3518 ACTCTGATGGGACAGTATATAGAATTTGTTGCCGATAGACTACTACTTGAGCTCGGATAC 3577 Query 58312 GAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGG 58371 || | || || || | ||||| ||||| |||||| | || ||| | || | Sbjct 3578 GATAAGGT--GTATAATGTTGACAATCCATTTGACTTTATGGAAAACATTTCGTTGGAAG 3635 Query 58372 GCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 ||||||| || ||||| |||| | |||| | |||||||||||| Sbjct 3636 GCAAGACTAATTTTTTTGAAAGACGAGTTGGGGAATATCAAAAA 3679 >seq364598 Length=45638 Score = 120 bits (132), Expect = 3e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 |||||| |||||||| |||| | | || || ||||||||||| |||| ||||||| | || Sbjct 2068 GTACGTCTCGTACGGTCCATCTCTGGCAGCCAGTTCGCAGCTGGCCTTCAACGCGGCATA 2009 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 || || ||||| ||||| | |||| | || ||| || ||| ||| |||| | Sbjct 2008 GTAGATGGTCTCAAAGATCTGGATGTTGAGTTTCTTGGCCTCGGGGCTCTCGAACGGGAA 1949 Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 ||||||| | ||| || ||||||| |||||| ||||| |||||||| || |||| Sbjct 1948 GCGCATCAAGATGAAGGCATCCGCCAGACCCTGGACGCCGATACCGATGGGGCGGT 1893 Score = 113 bits (124), Expect = 4e-20 Identities = 182/261 (70%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 22414 CCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCC 22473 ||||| |||| | |||| || || | |||||| ||||||| | || ||||| || Sbjct 3375 CCACAGGCCGAGATCCGTCAGGTCCTTCAGGAGATGAGGGTTCACGATCTGGAACTCTCC 3316 Query 22474 GGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCC 22533 || | |||||| | ||| |||||| ||| |||| |||| ||| || ||||| || Sbjct 3315 CGAGAGGACGCGCCTGGTGTAGATGTTGCTGGTGTACGGCTCGATAGACTCGTTGTTGCC 3256 Query 22534 CAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCC 22593 || ||||| || || |||||||||||||| || |||| || || ||| | | ||| Sbjct 3255 AAGGATCTGGGCAGTGGAAGCGGTCGGCATGGGAGCCAGGAGCAGACTGTTGCGGAGGCC 3196 Query 22594 GTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATT 22653 |||||| | || | ||| ||| || |||||| || |||| ||||| || Sbjct 3195 GTGCTTGGCGATGTCGGCCTTCAGCGCCGCCCAGTCGTGGAGGTCGGTGGGCGTGAC--- 3139 Query 22654 GTCCCACATATCGTATTGCAA 22674 | ||||||| ||||| ||||| Sbjct 3138 GCCCCACATGTCGTACTGCAA 3118 >seq251981 Length=36728 Score = 114 bits (126), Expect = 1e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 |||||| |||||||| || | | | || || ||||||||||| |||| ||||||| | || Sbjct 18671 GTACGTCTCGTACGGTCCGTCTCTGGCAGCCAGTTCGCAGCTGGCCTTCAACGCGGCATA 18730 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 || || ||||| ||||| | |||| | || ||| || ||||||| | || | Sbjct 18731 GTAGATGGTCTCAAAGATCTGGATGTTGAGTTTCTTGGCCTCGGGGCTTTCGAATGGGAA 18790 Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 |||||||| | ||| || || |||| |||||| ||||| |||||||| || |||| Sbjct 18791 GCGCATCATGATGAAAGCATCTGCCAGACCCTGGACGCCGATACCGATGGGGCGGT 18846 Score = 102 bits (112), Expect = 7e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || || || || | ||| || |||||||| || || ||||| ||| |||||||| Sbjct 21429 TCATGAACAGGTCGGGCACCCACAGGGCGTAGAAAAGGTCACGGGCACGCTGCTCCTCTT 21488 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | ||| |||||| || | || | ||||| || | ||||||||||||||||||||||| Sbjct 21489 TCCCGTGGTTCTTCTTGCAGTCTAGGAAGTCGAAGATGTCCGCATGCCACGGCTCGAGGT 21548 Query 23472 AAACGGCAAACGCGCCCGG 23490 | | || || || ||||| Sbjct 21549 AGATTGCGAAAGCACCCGG 21567 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGAT 22504 ||||| ||||||| | || ||||| || || | |||||| | ||| |||||| Sbjct 17346 AGATGCGGGTTCACAATCTGGAACTCTCCCGAGAGGACGCGCCTGGTGTAGATGTTGCTG 17405 Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564 ||| |||| |||| || || ||||| || || ||||| || || || ||||||||||| Sbjct 17406 GTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTGGAGGCGGTCGGCATG 17465 Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGAC 22624 || |||| || || ||| | | ||||||||| | ||| | ||| || || | Sbjct 17466 GGAGCCAGGAGCAGACTGTTGCGGAGGCCGTGCTTCGCAATGTCGGCCTTCAGAGCCGCC 17525 Query 22625 CAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674 ||||| || |||| ||||| ||| ||||||| ||||| ||||| Sbjct 17526 CAGTCGTGGAGGTCGGTGGGCGTGACA---CCCCACATGTCGTACTGCAA 17572 >seq286747 Length=126893 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || || || || | ||| || |||||||| || || ||||| ||| |||||||| Sbjct 122633 TCATGAACAGGTCGGGCACCCACAGGGCGTAGAAAAGGTCACGGGCACGCTGCTCCTCTT 122574 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | ||| |||||| || | || | ||||| || | |||||||||||| |||||||||| Sbjct 122573 TCCCGTGGTTCTTCTTGCAGTCTAGGAAGTCGAAGATGTCCGCATGCCAGGGCTCGAGGT 122514 Query 23472 AAACGGCAAACGCGCCCGG 23490 | | ||||| || || || Sbjct 122513 AGATTGCAAAGGCACCTGG 122495 >seq34585 Length=75490 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || |||||||| ||||| | || || || || Sbjct 7268 ATGCAGATCTTCGTGAAGACGCTAACTGGCAAAACCATCACTCTGGAGGTGGAGCCAAGT 7327 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || || || ||| | ||||||||| || | || || || || Sbjct 7328 GACACTATTGAAAATGTAAAGGCAAAGA-TCCAGGACAAGGAGGGTATCCCACCAGATCA 7386 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || |||||||| || ||| | || ||| || || || || || Sbjct 7387 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAA 7446 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || ||||| || ||||||||||| || ||| | || | || |||| Sbjct 7447 CATCCAGAAAGAGTCTACTCTTCATCTTGTGCTTCGTCTCCGTGGTGGTA 7496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || ||||| | || || || || | Sbjct 6812 ATGCAGATCTTCGTGAAGACGCTCACTGGCAAGACCATCACACTAGAGGTAGAGCCCAGC 6871 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||| || ||| || ||| | |||||||||||| | || || || || Sbjct 6872 GATACCATCGAAAACGTGAAAGCAAAGA-TCCAGGACAAGGAAGGTATCCCACCAGATCA 6930 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || ||| | || ||| || || || || || Sbjct 6931 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAA 6990 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || ||||| ||||||||||| || Sbjct 6991 TATCCAGAAGGAATCAACTCTTCATCTTGT 7020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || ||||| ||||| | || || || ||| Sbjct 7724 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACATTGGAGGTGGAGCCGAGT 7783 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || || || ||| | ||||| || || | || || || || Sbjct 7784 GACACTATTGAAAATGTAAAGGCAAAGA-TCCAAGACAAAGAGGGTATCCCACCAGATCA 7842 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| | || || | || | || || || Sbjct 7843 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGAACCCTATCTGACTACAA 7902 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| || ||||| ||||| || || Sbjct 7903 CATTCAGAAAGAGTCCACTCTCCATCTTGTTCT 7935 >seq620319 Length=78974 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 ||||||||||| ||||| || | || | ||||||||||| ||||| | |||| Sbjct 15458 CTGTTCAACGCTATCGAGACTCTTCCGTGTGTAACCAAGAAGGCACAGTGGGCGCTCAAC 15517 Query 57939 TGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 ||||| | || || ||| |||| ||| || | || || |||||||| || Sbjct 15518 TGGATCGCACACGACAAGGCTGATTTCGGTACAAGGGTAGTTGCATTTGCCGCCGTAGAG 15577 Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATG 58058 || || ||||| || ||| |||||| || || || ||| |||||||| | || || ||| Sbjct 15578 GGAATCTTCTTCTCTGGCTCCTTTGCTGCCATCTTCTGGTTGAAGAAAAGGGGACTAATG 15637 Query 58059 CCCGGCCTGACGTTTAGCAACGA 58081 ||||| || || || |||||| Sbjct 15638 CCCGGACTCACCTTCTCCAACGA 15660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442216589422320