Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq250674 297 2e-75 seq620319 116 5e-21 seq407716 116 5e-21 >seq250674 Length=71378 Score = 297 bits (328), Expect = 2e-75 Identities = 613/908 (68%), Gaps = 23/908 (3%) Strand=Plus/Minus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 || ||||||||||| ||||| || || ||| |||| ||||||||||| || |||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || |||||||| || ||||| |||||| |||||| || | || | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCA---TTTCACAATTC 33458 ||| | | |||||| || || ||||||||||| | ||||| || | || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG---TTG 3511 Query 33459 ATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCA 33518 || || || || | ||| || | || | ||||| | |||||| || || Sbjct 3510 ATCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGC- 3452 Query 33519 TTTGTTA------TAATAAATCTAACG-GTTTCTTCACTCGGTGGATGTAATAAATGTTT 33571 || ||| | |||||| | | || ||| ||| || | || || || Sbjct 3451 TTCATTAACCATGTGATAAATATGAGACGTATCT------GGTTTATTTTTTACATACTT 3398 Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 | | | ||| || ||||| || |||| ||||| || | ||| || | |||||| | Sbjct 3397 GTATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGC 3338 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 |||||| | ||||||| | || | |||||| ||||||||||||| ||| || | || Sbjct 3337 AAACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACC 3278 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33751 ||||| || || ||||| || | ||||| |||| ||| | ||| ||| || | Sbjct 3277 CGAAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGT 3218 Query 33752 ---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 || | |||||| | | ||||| | || || |||| | ||| || || || Sbjct 3217 ATTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTC 3158 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 || ||||| | | || | ||||| || |||||| || || || ||||||| || Sbjct 3157 GATTGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAG 3098 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 ||||||||| ||||| || ||||| ||||| ||||||||||| ||||| ||| | Sbjct 3097 CGAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGAC 3038 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 || | ||| || ||||| || ||| ||| ||||||||| || || || ||||| Sbjct 3037 TTCTGGAATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATC 2978 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 |||||| |||||||| || || || | ||||||| | |||| || || || Sbjct 2977 ACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACC 2918 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 | |||||| || | |||||||| | |||||||||||| ||||||||| ||| | Sbjct 2917 AAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCAC 2858 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 34168 ||| || |||||||| | ||| | || ||||||| ||||| ||| |||||| || Sbjct 2857 TGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCTGGC 2798 Query 34169 TGGATTTG 34176 ||||||| Sbjct 2797 AGGATTTG 2790 >seq620319 Length=78974 Score = 116 bits (128), Expect = 5e-21 Identities = 160/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | |||||| || || ||||||||||||||||| || | || | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || |||| ||| || || || || ||||||||||| ||||| || ||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33780 ||| | || || || | || |||| ||| ||||| || | ||||| | | Sbjct 15560 CAACTACCCTTGTACCGAAATCAGCCTTGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 15501 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 ||||||| ||||||| || | || || || || || || || Sbjct 15500 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 15458 >seq407716 Length=13296 Score = 116 bits (128), Expect = 5e-21 Identities = 160/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | |||||| || || |||||||| |||||||| || | ||| | Sbjct 4584 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCT 4643 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || |||| ||| || || || || ||||||||||| ||||| |||||||| | Sbjct 4644 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATG 4703 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33780 | | | ||| || || | || ||| ||| ||||| || | ||||| | | Sbjct 4704 CGACTACCCTCGTCCCGAAATCAGCCTCGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 4763 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 ||||||| ||||||| || | || || || || || || || Sbjct 4764 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 4806 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 ||||||||| || || || |||||||||||||| || ||||| || ||| || || | Sbjct 6538 ATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATGAAGTG 6597 Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 34087 || || | || || || ||||| | | ||| || || | || || ||||| Sbjct 6598 CTTCTCATTCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGACCTCTTC 6657 Query 34088 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 34147 | | ||||| || || ||||| || || || ||||| | ||||||||| ||||| ||||| Sbjct 6658 CGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATACTGGAT 6717 Query 34148 TGGGAAAATAACAAATCTATTTGGATT 34174 ||||| || ||||| || |||| || Sbjct 6718 GGGGAAGATGACAAACCTCCTTGGGTT 6744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624802118396880