Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq250674 311 8e-80 >seq250674 Length=71378 Score = 311 bits (344), Expect = 8e-80 Identities = 607/894 (68%), Gaps = 17/894 (2%) Strand=Plus/Minus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGT 11389 || ||||| ||||||||||| | |||||||| ||| |||||||||||||| ||||| | Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 11390 GATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAAC 11449 || || | ||||||||| ||| ||||| | ||||| | || || || | || | | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 11450 TCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATA 11509 || || || |||||| || || |||||||||||||| ||| | | || || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCGTTGATC 3508 Query 11510 CCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA 11569 || || ||| | ||| ||| | || || || |||||||| || | ||| || ||| Sbjct 3507 CCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTTCA 3448 Query 11570 ATGATTATCGACGTTATAACTTC----CTTAGATGGTGGATGTAATAAATGTTTAAACAT 11625 ||| | | || |||| | | || |||| || | || || || | | Sbjct 3447 ----TTAACCATGTGATAAATATGAGACGTATCTGGTTTATTTTTTACATACTTGTATAG 3392 Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 | |||||||||||||||||| || || || || | |||||| ||||| || | ||| || Sbjct 3391 GAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACGT 3332 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 ||| ||||||| |||| ||||||| ||||||||| |||||||| | ||| ||||| Sbjct 3331 TAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAAA 3272 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCT 11802 || || || ||||| | |||||||| || | | ||| | | | | ||| | Sbjct 3271 AAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTGTT 3212 Query 11803 AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 |||||| | | ||||| | ||||| |||| | || ||| || || || Sbjct 3211 GTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATTGC 3152 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 || | ||||| ||||| | | |||| |||| || || || || | | ||| Sbjct 3151 ATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGAATA 3092 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 |||||| ||||| ||||||||||| || || |||||||||||||| |||| | |||| Sbjct 3091 CATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTCTGG 3032 Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 | || || || | ||| | | | |||||| || ||||||||||||||||| | Sbjct 3031 AATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATCACTGGC 2972 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCA 12102 |||||||| |||| | | ||||| | | |||| || | || | | ||| Sbjct 2971 AGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCAAGCCA 2912 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTC---AACGGTCCAAAAACTTGCCACTGA 12159 ||| | || ||||| || ||||| |||||||| ||| |||||| ||||||| Sbjct 2911 ATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAAC---CCAAAATGAGGCCACTGC 2855 Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || |||||||||| ||| | ||| ||||| ||||| || ||| ||| ||||| Sbjct 2854 TTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCT 2801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 464793755464240