Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq250674 306 5e-78 seq620319 131 2e-25 seq407716 105 9e-18 >seq250674 Length=71378 Score = 306 bits (338), Expect = 5e-78 Identities = 605/891 (68%), Gaps = 11/891 (1%) Strand=Plus/Minus Query 35858 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 35917 || ||||||||||| ||||| || || ||| |||| ||||||||||| || ||||| || Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 35918 GATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAAT 35977 || || |||||||| || || ||||||||| ||||||||| | || | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 35978 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCA---TTTCACAATTC 36034 ||| | | |||||| || |||||||||||||| | ||||| || | || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG---TTG 3511 Query 36035 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 36094 || || || || | ||| || | || | ||||| | |||||| || || Sbjct 3510 ATCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCT 3451 Query 36095 TCTGTTATAATA-GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACAT 36153 || | | || |||| || | | || ||| || || || || | | Sbjct 3450 TCATTAACCATGTGATAAATATGAGACGTATCT-GGTTTATTTTTTACATACTTGTATAG 3392 Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 | ||| || ||||| || || | ||||| || | ||| || | |||||||| |||||| Sbjct 3391 GAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACGT 3332 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 | ||||||| | || | |||||| ||||||||||||| ||||| | || ||||| Sbjct 3331 TAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAAA 3272 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTC 36330 ||||| ||||| || | ||||| |||| ||| | ||| ||| | | | ||| Sbjct 3271 AAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTGTT 3212 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | |||||| | | ||||| | || || |||| | ||| || ||| ||| || || Sbjct 3211 GTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATTGC 3152 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 ||| | | || | ||||| || |||||| || || || || |||| || ||| Sbjct 3151 ATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGAATA 3092 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 |||||| ||||| || ||||| ||||| || |||||||| ||||| ||| | || | Sbjct 3091 CATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTCTGG 3032 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 36570 ||| || ||||| || ||| ||| ||||||||| || || || || |||||||| Sbjct 3031 AATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATCACTGGC 2972 Query 36571 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCA 36630 |||||||| || || || | ||||||| | |||| | || || | ||| Sbjct 2971 AGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCAAGCCA 2912 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 ||| || | |||||||| | |||||||||||| ||||||||| ||| |||| || Sbjct 2911 ATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCACTGCTTT 2852 Query 36691 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 |||||||| | ||| | || ||||||| ||||||| ||| |||||| || Sbjct 2851 CTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCT 2801 >seq620319 Length=78974 Score = 131 bits (144), Expect = 2e-25 Identities = 163/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | ||||||||| || ||||||||||||||||| || | || | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || |||| ||||| || ||||| ||||| ||||| ||||| || ||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGG 36356 ||| | || || || | || |||| ||| ||||| || | ||||| | | Sbjct 15560 CAACTACCCTTGTACCGAAATCAGCCTTGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 15501 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 ||||||| ||||||| || | ||||| ||||| || || || Sbjct 15500 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 15458 >seq407716 Length=13296 Score = 105 bits (116), Expect = 9e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 36544 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 36603 ||||||||| || || ||||||||||||||||| || ||||| || ||| || || | Sbjct 6538 ATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATGAAGTG 6597 Query 36604 TTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 36663 || || || || || || ||||| | | ||| || || | || || ||||| Sbjct 6598 CTTCTCATTCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGACCTCTTC 6657 Query 36664 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 36723 | | ||||| || || ||||| || || || ||||| | ||||||||| ||||| || || Sbjct 6658 CGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATACTGGAT 6717 Query 36724 TGGAAAAATAACAAATCT 36741 || || || ||||| || Sbjct 6718 GGGGAAGATGACAAACCT 6735 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||| || ||||| |||||||| || ||||| | |||||||| || || || || ||||| Sbjct 3046 CATGACACCCATCTTTTGGTACTCTCCCACCCTCTTTTCGAAGAAGTTCGTCTTGCCTTC 3105 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATT 35946 | ||| || || |||||||| ||||||||||| Sbjct 3106 CAGTGAGATGTTCTCCATGAAGTCGAATGGATT 3138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652931514951640