Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq250674 116 3e-21 >seq250674 Length=71378 Score = 116 bits (128), Expect = 3e-21 Identities = 433/667 (65%), Gaps = 19/667 (3%) Strand=Plus/Plus Query 22537 ATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAAATATACATGCTGAA 22596 |||||||||| | || |||||||| |||||| | || ||||||||||| ||| | ||| Sbjct 3029 ATTCCAGAAGTCCGATACTTCTATGGATTTCAGATTGCCATGGAAAATATCCATTCCGAA 3088 Query 22597 ATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG---AATCAAG--CCGCATTGT 22651 |||||| | | |||||| || | ||| ||||| || ||| | |||| Sbjct 3089 ATGTATTCGCTGCTGATCGAAACGTACGTA---AAAGATTCCAAACAAAAACAACATTTG 3145 Query 22652 TTTCA-GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGTGGGCTGCACAATGG 22710 | | ||| || || || || ||| || || || ||| | ||||| | | ||| Sbjct 3146 ATAAATGCAATCGAGGAAATTCCGTGTATTCAAAAAAAAGCAAAATGGGCATTAGACTGG 3205 Query 22711 CT-GAATGCCACACAT-AAGTCTATCGCAACACGTCTCTTGGCCTTTGCGGCTGTTGAAG 22768 | || | | ||| |||| | | || || || | || ||||| | || |||| Sbjct 3206 ATAGACAACAATACAGCAAGTTTT--GGTACCCGCCTTGTTGCATTTGCCGTGGTGGAAG 3263 Query 22769 GCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCA--T 22826 || | | ||||| || | ||||| |||||||| ||||| || || | | | | | Sbjct 3264 GCATTTTTTTTTCGGGTGCGTTTGCTGCCATATTTTGGCTAAAAAAGAGA--GGTAAATT 3321 Query 22827 GCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTT 22886 ||| || || ||||| ||||||| |||| || || || || || | || ||||| || Sbjct 3322 GCCCGGTTTAACGTTTGCCAACGAACTGATAAGTCGCGATGAGGGATTGCATTGTGATTT 3381 Query 22887 TGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAGGACGATGCACATCAAAT 22946 ||| ||| | || | | | | | ||| ||||| | | || |||| || Sbjct 3382 TGCGTGTCTCCTATACAAGTATGTAAAAAATAAACCAGATACGTCTCATATTTATCACAT 3441 Query 22947 CATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAGAGGCACTAAAGACACCCCT 23006 | ||| || ||||| ||||| | || ||||| || || | | | || Sbjct 3442 GGTTAATGAAGCTGTTGAGATTGAAAAGGAATTCTTAACGGATGCCTTTCAATGCGCTCT 3501 Query 23007 ACTTGGTATGAATAGTGACAGT-ATGAGACTGTACATACAGTTTGTTGCAGATCGCCTGC 23065 | | || || || | || | ||| ||| ||| ||| | |||||||| ||| | || | Sbjct 3502 AATCGGGATCAAC-GCAACTCTGATGGGACAGTATATAGAATTTGTTGCCGATAGACTAC 3560 Query 23066 TCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCAATCCATTTGATTTCATGGATA 23125 | || || || || | ||| ||||||| |||| |||||||||||| || ||||| | Sbjct 3561 TACTTGAGCTCGGATACGATAAGGTGTATAATGTTGACAATCCATTTGACTTTATGGAAA 3620 Query 23126 ACATTAGCATTGAAGGTAAAACAAACTTCTTTGAACGCCGTGTGAGTGAATATCAGCGAA 23185 ||||| | ||||| || || || || |||||| | || || | |||||||| || Sbjct 3621 ACATTTCGTTGGAAGGCAAGACTAATTTTTTTGAAAGACGAGTTGGGGAATATCAAAAAA 3680 Query 23186 TGGGTGT 23192 ||||||| Sbjct 3681 TGGGTGT 3687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353467694457613