Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq250674 129 6e-25 seq34585 102 8e-17 >seq250674 Length=71378 Score = 129 bits (142), Expect = 6e-25 Identities = 373/569 (66%), Gaps = 15/569 (3%) Strand=Plus/Plus Query 52500 GATTCCGGACAAAAAGCATCAAGACTTGATACTCAACGCTTTTGACAATGTTCCGTGTGT 52559 |||||| ||||||| ||| | |||||| || || | || | |||||||| | Sbjct 3122 GATTCCAAACAAAAA----CAACATTTGATA---AATGCAATCGAGGAAATTCCGTGTAT 3174 Query 52560 GCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGA 52619 | ||||| | | |||||||| | ||||| || ||| | | ||| | ||||| Sbjct 3175 TCAAAAAAAAGCAAAATGGGCATTAGACTGGATAGACAACAATACAGCAAGTTTTGGTAC 3234 Query 52620 ACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAAT 52679 || || || || ||||| | |||||||| | |||||||||||| ||||| || || Sbjct 3235 CCGCCTTGTTGCATTTGCCGTGGTGGAAGGCATTTTTTTTTCGGGTGCGTTTGCTGCCAT 3294 Query 52680 ATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATC 52739 ||||| | |||| || | | ||||||| | |||||| |||||| ||||| Sbjct 3295 ATTTTGGCTAAAAAAGAGAGGTAAATTGCCCGGTTTAACGTTTGCCAACGAACTGATAAG 3354 Query 52740 GCGCGACGAAGGAATGCACACAGATTTTGCGTGT-TTGTATTATAATACGCGCGTTAAAG 52798 ||||| || ||| |||| |||||||||||| | ||| | || | |||| Sbjct 3355 TCGCGATGAGGGATTGCATTGTGATTTTGCGTGTCTCCTATACAAGTATG-----TAAAA 3409 Query 52799 AAAAATTGTCATATG-AAAAAATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAAAA 52857 || || ||| | | ||| ||||| |||| || || || || |||||||| Sbjct 3410 AATAAACCAGATACGTCTCATATTTATCACATGGTTAATGAAGCTGTTGAGATTGAAAAG 3469 Query 52858 GAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGC 52917 || || || ||||| || || | | | | || || ||||| || ||||| | Sbjct 3470 GAATTCTTAACGGATGCCTTTCAATGCGCTCTAATCGGGATCAACGCAACTCTGATGGGA 3529 Query 52918 GAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTAT 52977 |||| || || |||||||| || ||||| | | ||||||| | || ||| Sbjct 3530 CAGTATATAGAATTTGTTGCCGATAGACTACTACTTGAGCTCGGATACGATAAGGTGTAT 3589 Query 52978 AATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTT 53037 |||| || || ||| |||||| | ||||| ||| | || ||||| || || ||| Sbjct 3590 AATGTTGACAATCCATTTGACTTTATGGAAAACATTTCGTTGGAAGGCAAGACTAATTTT 3649 Query 53038 TTCGAGAGACGTGTGGGCGAGTA-CAAAA 53065 || || ||||| || || || || ||||| Sbjct 3650 TTTGAAAGACGAGTTGGGGAATATCAAAA 3678 >seq34585 Length=75490 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||||||||||| || ||||| || || || || | ||| |||||||| Sbjct 7470 TGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCCTCGAGCTGC 7411 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| |||| ||||| |||||||| || || || || || ||||| ||| ||| Sbjct 7410 TTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGATCTTT 7351 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| | ||||| | ||||||||||| | || | || ||||| || Sbjct 7350 GCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGTTTTGCCAGTT 7291 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | ||| || ||||| || |||||| Sbjct 7290 AGCGTCTTCACGAAGATCTGCATA 7267 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | || | || |||||||| |||||||| || || Sbjct 7953 TGGCCACCACGGAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCA 7894 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || || || |||||||| || ||||| |||| ||||| |||||||| || Sbjct 7893 GATAGGGTTCTGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGT 7834 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || || |||||||| ||| ||| |||| | ||| | ||||| | |||||| Sbjct 7833 GGGATACCCTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCC 7774 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || | || || ||||| | || || ||||| || |||||| Sbjct 7773 ACCTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATA 7723 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| |||||||| || ||||| |||| ||||| |||||||| || || || || ||||| Sbjct 7195 GTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTT 7136 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| ||| |||| | ||| | ||||| | ||||||||||||| || | Sbjct 7135 GTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGAT 7076 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| || | || || ||||| || |||||| Sbjct 7075 GGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCATA 7039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492113650143200