Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq250674 316 3e-81 seq620319 134 2e-26 seq407716 125 1e-23 >seq250674 Length=71378 Score = 316 bits (350), Expect = 3e-81 Identities = 620/911 (68%), Gaps = 29/911 (3%) Strand=Plus/Minus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 || ||||||||||| ||||| || || ||| |||| ||||||||||| || |||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 || || |||||||| || ||||| |||||| ||||||||| | || | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCA---TTTCACAATTC 49836 ||| | | |||||| || |||||||||||||| | ||||| || | || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG---TTG 3511 Query 49837 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 49896 || || || || | ||| || | || | ||||| | |||||| || || Sbjct 3510 ATCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCT 3451 Query 49897 TC--------TGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTT 49948 || ||| |||| | || ||| | ||| ||| || || || | Sbjct 3450 TCATTAACCATGTGATAA-ATATGAGACG-TATCT------GGTTTATTTTTTACATACT 3399 Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 | | | | ||| || ||||| || |||| ||||| || | ||| || |||||||||| Sbjct 3398 TGTATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGG 3339 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068 |||||| | ||||||| | || | |||||| ||||||||||||| ||||| | | Sbjct 3338 CAAACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCAC 3279 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC 50128 | ||||| || || ||||| || ||||||| |||||||| | ||| |||| || Sbjct 3278 CCGAAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTG 3219 Query 50129 T---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 | || | |||||| | | ||||| | || || |||| | ||| || || | Sbjct 3218 TATTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCT 3159 Query 50186 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 50245 | || ||||| | | || | ||||| || |||||| || || || ||||||| | Sbjct 3158 CGATTGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCA 3099 Query 50246 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 50305 | ||||||||| ||||| || ||||| ||||| ||||||||||| ||||| ||| Sbjct 3098 GCGAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGA 3039 Query 50306 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGC--TAAATTTTCATTCACTATTCC 50363 | || | ||| || ||||| || ||| ||| ||| ||||||||| || || || || Sbjct 3038 CTTCTGGAATTTGAACTTCACGACTAAAGCGT--AGCATTAAATTTTCGTTTACAATACC 2981 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG 50423 |||||||| |||||||| || || || | ||||||||| |||| | || || Sbjct 2980 ATCACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAG 2921 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 | |||||| || | |||||||| | ||| |||||||| ||||||||| || Sbjct 2920 ACCAAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGC 2861 Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 | |||| || |||||||| | ||| | || ||||||| ||||| ||| |||||| || Sbjct 2860 CACTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCT 2801 Query 50544 ATTTGGATTTG 50554 ||||||| Sbjct 2800 GGCAGGATTTG 2790 >seq620319 Length=78974 Score = 134 bits (148), Expect = 2e-26 Identities = 164/223 (74%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || ||||||||||| || ||||||||||||||||| || | || | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || |||| ||||| || ||||| ||||||||||| ||||| |||||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 50158 |||| | || || || || |||| ||| ||||| || | ||||| | | Sbjct 15560 CAACTACCCTTGTACCGAAATCAGCCTTGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 15501 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 ||||||| ||||||| || | || || || || || || || Sbjct 15500 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 15458 >seq407716 Length=13296 Score = 125 bits (138), Expect = 1e-23 Identities = 164/224 (73%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || ||||||||||| || |||||||| |||||||| || | ||| | Sbjct 4584 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCT 4643 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || |||| ||||| || || || ||||||||||| ||||| || ||||| | Sbjct 4644 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATG 4703 Query 50102 CAACAAGTCTC-TCTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCG 50157 | || | ||| || | | | | | | | ||| ||| ||||| || | ||||| | Sbjct 4704 CGACTACCCTCGTCCCGAAATCAGCCTC-GTCGTGTGCGATCCAGTTGAGCGCCCACTGT 4762 Query 50158 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 |||||||| ||||||| || | || || || || || || || Sbjct 4763 GCCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 4806 Score = 122 bits (134), Expect = 1e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 ||||||||| || || ||||||||||||||||| || ||||| || ||| || || || Sbjct 6538 ATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATGAAGTG 6597 Query 50406 TTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 50465 || || || || || || ||||| | | ||| || || | || || ||||| Sbjct 6598 CTTCTCATTCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGACCTCTTC 6657 Query 50466 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 50525 | | ||||| || || ||||| || || || ||||| | ||||||||| ||||| ||||| Sbjct 6658 CGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATACTGGAT 6717 Query 50526 TGGGAAAATAACAAATCTATTTGGATT 50552 ||||| || ||||| || |||| || Sbjct 6718 GGGGAAGATGACAAACCTCCTTGGGTT 6744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712548947216440