Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq250674 293 2e-74 seq620319 96.9 3e-15 seq407716 96.9 3e-15 >seq250674 Length=71378 Score = 293 bits (324), Expect = 2e-74 Identities = 611/902 (68%), Gaps = 30/902 (3%) Strand=Plus/Minus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 || ||||||||||||||||| | ||||| | ||||||| || ||||| || ||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAG 13690 || || ||||||||||| ||||||||||| | |||| | |||| ||||| | || || Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTG-TCAACATTATACACCTTATCGTATCCGAG 3569 Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750 || | ||||| |||||| |||| ||| || ||||| || ||| | | || || Sbjct 3568 CTCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCGTTGAT 3509 Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13810 || ||||| ||| || ||||| ||||| ||||| || ||||| || Sbjct 3508 CCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTTC 3449 Query 13811 TTTTATAATAATTGTAATAATCTCATTAGAAGGA---GG---ATATTTTAGATGTTTAAA 13864 || | || || |||| || ||| | | || || ||||| || || | Sbjct 3448 ATTAACCAT----GTGATAAAT--ATGAGACGTATCTGGTTTATTTTTTACATACTTGTA 3395 Query 13865 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 13924 | | |||||||||||||||||| | |||||||| | ||| || |||||||| | ||| Sbjct 3394 TAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAA 3335 Query 13925 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGA 13984 ||||| || |||| |||| ||||||| ||||||||| |||||||| | || || Sbjct 3334 CGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGA 3275 Query 13985 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14044 ||| || || || || || | ||||| || | | || ||||| |||| | || Sbjct 3274 AAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATT 3215 Query 14045 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14104 ||| |||||| | | ||||||| | |||||||| |||| | ||| || || Sbjct 3214 GTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGAT 3155 Query 14105 AGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14164 ||||| | |||| || || | ||| | | | | ||| || || || || | Sbjct 3154 TGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGA 3095 Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 ||||||||| || || || |||||||| || |||||||| ||||| ||| ||| |||| Sbjct 3094 ATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTC 3035 Query 14225 CGACCATTGTACTTC-CGAGTAAA----ATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 | ||| ||||| ||| |||| | | || |||||||| || || |||||| Sbjct 3034 TGGAATTTGAACTTCACGACTAAAGCGTAGCATT-----AAATTTTCGTTTACAATACCA 2980 Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339 ||||| || |||||||| || || | || |||||| | | || |||| |||| Sbjct 2979 TCACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGA 2920 Query 14340 TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATC---AACTGTCCAAAAACTA 14396 ||||||| || || ||||| | ||| ||||| || ||| |||||| Sbjct 2919 CCAAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAAC---CCAAAATGAG 2863 Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAAT 14456 || || ||||| ||||||||| |||||| || | |||| || ||| ||| ||||| Sbjct 2862 GCCACTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAAC 2803 Query 14457 CT 14458 || Sbjct 2802 CT 2801 >seq620319 Length=78974 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| || ||||||||||| || || || | ||| ||||| | ||| | ||| | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| || || |||||||| || || || ||||| |||||||| || || ||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 14014 C 14014 | Sbjct 15560 C 15560 >seq407716 Length=13296 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| || ||||||||||| || || || | ||| ||||| | ||| | || | Sbjct 4584 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCT 4643 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| || || |||||||| || || || ||||| |||||||| || |||||||| | Sbjct 4644 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATG 4703 Query 14014 C 14014 | Sbjct 4704 C 4704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475907740041400