Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq250674 297 2e-75 seq620319 93.3 4e-14 seq407716 93.3 4e-14 >seq250674 Length=71378 Score = 297 bits (328), Expect = 2e-75 Identities = 609/897 (68%), Gaps = 20/897 (2%) Strand=Plus/Minus Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 || ||||||||||||||||| | ||||| | |||||||||| ||||| || ||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAG 13478 || || ||||||||||| || |||||||| || |||| | |||| ||||| | || || Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATT-GTCAACATTATACACCTTATCGTATCCGAG 3569 Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538 || | || || |||||| |||| ||| || ||||| || ||| | | || || Sbjct 3568 CTCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCGTTGAT 3509 Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598 || ||||| ||| || ||||| ||||| ||||| || ||||| || Sbjct 3508 CCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTTC 3449 Query 13599 GTTTATAATAATCTTAATAATGTCAT-TAGAAGGAGGATATTTTAGATGTTTAAAAATTA 13657 || | || | |||| || | || || || ||||| || || | | | Sbjct 3448 ATTAACCATGTGATAAATA-TGAGACGTATCTGGTTTATTTTTTACATACTTGTATAGGA 3390 Query 13658 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13717 |||||||||||||||||| | |||||||| | ||| || |||||||| | ||| |||| Sbjct 3389 GACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACGTTA 3330 Query 13718 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 13777 | || |||| |||| ||||||| ||||||||| ||||| || | || ||||| | Sbjct 3329 AACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAAAAA 3270 Query 13778 ATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTG 13837 | || || || || | ||||| || | || || ||||| |||| | ||||| Sbjct 3269 AAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTGTTGT 3210 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 |||||| | | ||||||| | |||||||| |||| | ||| |||||||||| Sbjct 3209 CTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATTGCAT 3150 Query 13898 TGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 | | ||||||| || | ||| | | | | ||| || || || || | ||||| Sbjct 3149 TTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGAATACA 3090 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 |||| || || || ||||| || || |||||||| ||||| || ||| |||||| Sbjct 3089 TTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTCTGGAA 3030 Query 14018 ATTGTACCTC-CGAGTAAA----ATCTTTCTGCCAAGTTTTCATTAACAATACCATCACT 14072 ||| || || ||| |||| | | || || ||||| || |||||||||||||| Sbjct 3029 TTTGAACTTCACGACTAAAGCGTAGCATT-----AAATTTTCGTTTACAATACCATCACT 2975 Query 14073 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14132 || |||||||| || || | || |||||| | | || |||| |||| Sbjct 2974 GGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCAAG 2915 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATC---AACTGTCCAAAAACTAGCGAC 14189 ||||||| || || ||||| | ||| ||||| || ||| |||||| || || Sbjct 2914 CCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAAC---CCAAAATGAGGCCAC 2858 Query 14190 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 ||||| ||||||||| |||||| || | |||| || ||| ||| ||||| || Sbjct 2857 TGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCT 2801 >seq620319 Length=78974 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| || ||||||||||| || || || | ||| ||||| | ||| | ||| | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||| || || ||||| || || || || ||||| |||||||| || || ||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 13802 C 13802 | Sbjct 15560 C 15560 >seq407716 Length=13296 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| || ||||||||||| || || || | ||| ||||| | ||| | || | Sbjct 4584 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCT 4643 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||| || || ||||| || || || || ||||| |||||||| || |||||||| | Sbjct 4644 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATG 4703 Query 13802 C 13802 | Sbjct 4704 C 4704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474777611932440