Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq250674 306 5e-78 seq620319 116 5e-21 seq407716 107 3e-18 >seq250674 Length=71378 Score = 306 bits (338), Expect = 5e-78 Identities = 620/913 (68%), Gaps = 33/913 (4%) Strand=Plus/Minus Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 || ||||||||||| ||||| || || ||| |||| |||||||||||||| |||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 || || |||||||| || ||||| |||||| ||||||||| | || | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCA---TTTCACAATTC 41941 ||| | | |||||| || | ||||||||||| | ||||| || | || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG---TTG 3511 Query 41942 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 42001 || || || || | ||| || | || | ||||| | |||||| || || Sbjct 3510 ATCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCT 3451 Query 42002 TC--------TGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTT 42053 || ||| |||| | || || || ||| ||| || || || | Sbjct 3450 TCATTAACCATGTGATAA-ATATGAGAC-GTATCT------GGTTTATTTTTTACATACT 3399 Query 42054 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113 | | | | ||| || ||||| || |||| |||||||| | ||| || | |||||||| Sbjct 3398 TGTATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGG 3339 Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATC 42173 |||||| | ||||||| | || | |||||| ||||||||||| | ||||| | | Sbjct 3338 CAAACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCAC 3279 Query 42174 CAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-- 42231 | ||||| || || ||||| || | ||||| |||| ||| | ||| ||| || Sbjct 3278 CCGAAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTG 3219 Query 42232 -ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 42290 | ||| | |||||| | | ||||| | || || |||| | ||| || || | Sbjct 3218 TATTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCT 3159 Query 42291 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAA 42350 | || ||||| | | || | ||||| || |||||| || || || ||||||| | Sbjct 3158 CGATTGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCA 3099 Query 42351 GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGG 42410 | ||||||||| ||||| || ||||| ||||| ||||||||||| ||||| ||| | Sbjct 3098 GCGAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGA 3039 Query 42411 CCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGC--TAAATTTTCGTTCACTATTCC 42468 | || | || || ||||| || ||| ||| ||| |||||||||||| || || || Sbjct 3038 CTTCTGGAATTTGAACTTCACGACTAAAGCGT--AGCATTAAATTTTCGTTTACAATACC 2981 Query 42469 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA 42528 |||||||| |||||||| || || || | ||||||| | |||| || || | Sbjct 2980 ATCACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAG 2921 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC--TACCGTCCAAAATGAT 42586 | |||||| || | |||||||| | ||| |||||||| || | ||||||||| Sbjct 2920 ACCAAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAAC--CCAAAATGAG 2863 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAAT 42646 || |||| || |||||||| | ||| | ||| ||||||| |||||| ||| |||||| Sbjct 2862 GCCACTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAAC 2803 Query 42647 CTATTTGGATTTG 42659 || ||||||| Sbjct 2802 CTGGCAGGATTTG 2790 >seq620319 Length=78974 Score = 116 bits (128), Expect = 5e-21 Identities = 160/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | ||||||||| || ||||||||||||||||| || | || | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || | ||||| || ||||| ||||||||||| ||||| || ||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGG 42263 ||| | || || || | || |||| ||| ||||| || | ||||| | | Sbjct 15560 CAACTACCCTTGTACCGAAATCAGCCTTGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 15501 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 ||||||| ||||||| || | || || || || || || || Sbjct 15500 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 15458 >seq407716 Length=13296 Score = 107 bits (118), Expect = 3e-18 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | ||||||||| || |||||||| |||||||| || | ||| | Sbjct 4584 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCT 4643 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || | ||||| || || || ||||||||||| ||||| || ||||| | Sbjct 4644 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATG 4703 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGG 42263 | | | ||| || || | || ||| ||| ||||| || | ||||| | | Sbjct 4704 CGACTACCCTCGTCCCGAAATCAGCCTCGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 4763 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 ||||||| ||||||| || | || || || || || || || Sbjct 4764 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 4806 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 |||||| || || || ||||||||||||||||| || ||||| || ||| || || | Sbjct 6538 ATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATGAAGTG 6597 Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570 || || | | || | || ||||| | | ||| || || | || || ||||| Sbjct 6598 CTTCTCATTCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGACCTCTTC 6657 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630 ||||||| || || || || || || || ||||| | |||||| || ||||| || || Sbjct 6658 CGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATACTGGAT 6717 Query 42631 TGGGAAAATAACAAATCTATTTGGATT 42657 ||||| || ||||| || |||| || Sbjct 6718 GGGGAAGATGACAAACCTCCTTGGGTT 6744 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||||||||| || |||||||| || || ||||| || ||||||||||| || |||||| Sbjct 5377 TACATTTCTGAGTGGATGTTTTCGATTGCAATCTGGAACCCGTAGAAACACCTTGCCTCG 5436 Query 42416 GTAACCTGTACTTCT 42430 | |||||| |||||| Sbjct 5437 GCAACCTGAACTTCT 5451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665794658483960