Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq250674 118 2e-21 seq407716 111 2e-19 seq121207 98.7 1e-15 seq620319 96.9 5e-15 seq631808 95.1 2e-14 seq251981 84.2 3e-11 >seq250674 Length=71378 Score = 118 bits (130), Expect = 2e-21 Identities = 374/571 (65%), Gaps = 19/571 (3%) Strand=Plus/Plus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 ||||| || | ||||||||||| || || || |||||| |||||| |||||| Sbjct 2825 TATCACGATGTATGGGAAATGTATAAGAAAGCAGTGGCCTCATTTTGGGTTACCGAAGAA 2884 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 || ||| |||| || ||| | ||||||| | | || | || || ||| || | Sbjct 2885 GTGGATTTGTCTAAAGACGTAAACGATTG---GCTTGGTCTCACGGATGATGAAAGACAT 2941 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 ||||| | | || | || ||||| ||||| | | ||||| || || ||||| ||| | Sbjct 2942 TTTATTTTGTACGTGTTAGCCTTTTTTGCTGCCAGTGATGGTATTGTAAACGAAAATTTA 3001 Query 125190 TTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCA 125248 || ||| || || | |||| | |||||||| || | ||| || ||||| || Sbjct 3002 ATGCTACGCTTTAGTCGTGAAGTTCA-AATTCCAGAAGTCCGATACTTCTATGGATTTCA 3060 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 || || || || | || || |||||||| || ||||| || | |||| | Sbjct 3061 GATTGCCATGGAAAATATCCATTCCGAAATGTATTCGCTGCTGATCGAAACGTACGTAAA 3120 Query 125309 CGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 ||| | ||| |||| |||| | | || |||||||| | |||| ||| | | Sbjct 3121 AGATTCCAAACAAAAACAACAT-TTGATAAATGCAATCGAGGAAATTCCGTGTATTCAAA 3179 Query 125368 AAAAGGCTCAATGGGTGATTCG-GTGGATCGATGACGA-----CAAGTCTTCGTACGCCG 125421 |||| || |||||| ||| | ||||| || || | ||||| || |||| Sbjct 3180 AAAAAGCAAAATGGG-CATTAGACTGGATAGACAACAATACAGCAAGTTTTGGTAC---- 3234 Query 125422 ACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCA 125481 | | || || ||||| |||| || || ||||| || ||||||||| ||||| |||| Sbjct 3235 -CCGCCTTGTTGCATTTGCCGTGGTGGAAGGCATTTTTTTTTCGGGTGCGTTTGCTGCCA 3293 Query 125482 TCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATAT 125541 | |||||||| || ||| | || ||||||| | ||| ||||| | ||| Sbjct 3294 TATTTTGGCTAAAAAAGAGAGGTAAATTGCCCGGTTTAACGTTTGCCAACGAACTGATAA 3353 Query 125542 CTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||| || ||||| | || ||||| ||||| Sbjct 3354 GTCGCGATGAGGGATTGCATTGTGATTTTGC 3384 >seq407716 Length=13296 Score = 111 bits (122), Expect = 2e-19 Identities = 158/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 124973 AGAGCCCAGCAGTAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTA 125032 ||| |||| || || ||| | | || |||||| |||||| ||||| ||| | ||||| Sbjct 6746 AGAACCCA--AGGAGGTTTGTCATCTTCCCCATCCAGTATCACGACATCTGGCACATGTA 6689 Query 125033 CAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTA 125092 ||| || || |||| || || ||||||| ||||||||||| || |||||||| ||| | Sbjct 6688 CAAGAAAGCCGAGGCGTCGTTCTGGACGGCGGAAGAGGTCGACCTCTCCAAGGATCTGGA 6629 Query 125093 CGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTT 125152 |||||| | | |||| | | |||| | || || || ||| | ||||| || Sbjct 6628 ACATTGGGCAAAGC---TGACGAAGAATGAGAAGCACTTCATCTCACACGTCTTGGCATT 6572 Query 125153 CTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGA 125193 |||||| | | || || |||||||| || |||||| ||| Sbjct 6571 CTTTGCAGCCAGTGACGGCATCGTCAATGAAAATCTGGTGA 6531 >seq121207 Length=41830 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/206 (70%), Gaps = 12/206 (6%) Strand=Plus/Plus Query 127366 TAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGAT 127425 ||||||| || || |||| || ||||||||||||||| || || ||||| || Sbjct 30517 TAGTCGATCAGCCCTGTCTCGGGGAACACCTTGTACGGCATCGACTCAAAGAAGAGCGAG 30576 Query 127426 GTAGCGGACACGTTG--------CG----GAATCCGTGCGTCAGGTGGCCTCCGTCGGGC 127473 || || || | || || ||| ||||| |||||||| || ||||||||| Sbjct 30577 GTGGCCGAGATCTTCTTCTTGGCCGTCATGAAACCGTGGGTCAGGTGACCCCCGTCGGGC 30636 Query 127474 AGATCGAGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTG 127533 || || || |||||||| | ||||| || | ||| || ||||| || ||||||||| Sbjct 30637 AGGTCCAGGCCCATGATGCGGCCGTGGGGACCGATGATACCGGTGTAGACCGCAAAGTTG 30696 Query 127534 GCCATCGAGCCCGAGTACGGTTGTAC 127559 ||| ||||| |||||||| || || Sbjct 30697 GCCGGGGAGCCGGAGTACGGCTGGAC 30722 >seq620319 Length=78974 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 || || ||||| ||||| || | |||| | || || ||||| || |||| | | Sbjct 15458 CTGTTCAACGCTATCGAGACTCTTCCGTGTGTAACCAAGAAGGCACAGTGGGCGCTCAAC 15517 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||||| |||||||| || | || || | || ||||| |||||||||||| Sbjct 15518 TGGATCGCACACGACAAGGCTGATTTCGGTACAAGGGTAGTTGCATTTGCCGCCGTAGAG 15577 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || |||||||| || || ||||| |||||||| ||| | ||||| | ||||| ||| Sbjct 15578 GGAATCTTCTTCTCTGGCTCCTTTGCTGCCATCTTCTGGTTGAAGAAAAGGGGACTAATG 15637 Query 125511 CCCGGACTGAC 125521 |||||||| || Sbjct 15638 CCCGGACTCAC 15648 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| |||||| ||||| ||| | |||||||| || || |||| || || ||| Sbjct 13511 TTCCCCATCCAGTATCACGACATCTGGCACATGTACAAGAAAGCCGAGGCATCGTTCTGG 13570 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||||||||||| || |||||||| ||| | |||||| | | |||| | Sbjct 13571 ACAGCGGAAGAGGTCGACCTCTCCAAGGATCTGGAACATTGGGCAAAGC---TGACGAAG 13627 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 | |||| | || || || || | ||||| ||||| || | || || |||||| Sbjct 13628 AATGAGAAGCACTTCATCTCACATGTCTTGGCATTCTTCGCAGCAAGTGACGGCATCGTC 13687 Query 125178 AACGACAATCTGTTGA 125193 || || |||||| ||| Sbjct 13688 AATGAAAATCTGGTGA 13703 >seq631808 Length=27342 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/206 (70%), Gaps = 12/206 (6%) Strand=Plus/Plus Query 127366 TAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGAT 127425 ||||||| || || |||| || ||||||||||||||| || || ||||| || Sbjct 8472 TAGTCGATCAGCCCTGTCTCGGGGAACACCTTGTACGGCATCGACTCAAAGAAGAGCGAG 8531 Query 127426 GTAGCGGACACGTTG--------CG----GAATCCGTGCGTCAGGTGGCCTCCGTCGGGC 127473 || || || | || || ||| ||||| |||||||| || ||||| ||| Sbjct 8532 GTGGCCGAGATCTTCTTCTTGGCCGTCATGAAACCGTGGGTCAGGTGACCCCCGTCAGGC 8591 Query 127474 AGATCGAGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTG 127533 || || || |||||||| | ||||| || | ||| || ||||| || ||||||||| Sbjct 8592 AGGTCCAGGCCCATGATGCGGCCGTGGGGACCGATGATACCGGTGTAGACCGCAAAGTTG 8651 Query 127534 GCCATCGAGCCCGAGTACGGTTGTAC 127559 ||| ||||| |||||||| || || Sbjct 8652 GCCGGGGAGCCGGAGTACGGCTGGAC 8677 >seq251981 Length=36728 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 97208 AGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAAC 97266 |||||| || ||||| ||||| |||||||||| | || || ||||| |||||||| | Sbjct 20742 AGAGACGGGTACTCCCTACATGGTCTACAAGGAC-CATTGCAACCGCAAGAGCAACCAGC 20684 Query 97267 GCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTC 97326 || |||||||||||||| || || || |||||||| || || |||||| || | Sbjct 20683 AGAACCTGGGCACCATCAAGTGCAGTAACCTCTGCACGGAGATCGTTGAGTACTCCAGCC 20624 Query 97327 CGGACGAG 97334 |||| ||| Sbjct 20623 CGGATGAG 20616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735157858429960