Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq250674 273 2e-68 >seq250674 Length=71378 Score = 273 bits (302), Expect = 2e-68 Identities = 603/891 (68%), Gaps = 30/891 (3%) Strand=Plus/Minus Query 12856 CATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAAT 12915 ||||||||||||||| | ||||| | |||||||||| || || || ||||| |||||||| Sbjct 3682 CATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAACGAAAT 3623 Query 12916 ATTTTCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTTTTACACCCTAATTCT 12973 ||||||||||| || || ||||| | |||| ||| || | | || | || Sbjct 3622 GTTTTCCATAAAGTCAAATGGATTGTC--AACATTATACACCTTATCGTATCCGAGCTCA 3565 Query 12974 AGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCT 13033 |||| | ||| || |||||||| ||||| |||||| ||| | | ||| || || Sbjct 3564 AGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCGTTGATCCCG 3505 Query 13034 ATTAAT-----TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTT 13088 |||| || | |||||| | ||||| || | ||||| || ||||| |||| Sbjct 3504 ATTAGAGCGCATTGAAAGGCAT-----CCGTTAAGAATTCCTTTTCAATCTCAACAGCTT 3450 Query 13089 CGATAACTATGTCTCTTATTACGTTCTCTAA-TGGAGGATTTGATAGATGCTTAAACATC 13147 | |||| |||| | | || | || ||| |||| || || ||| | | Sbjct 3449 CATTAACCATGTGA-TAAATATGAGACGTATCTGGTTTATTTTTTACATACTTGTATAGG 3391 Query 13148 ATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTT 13207 | ||| ||||||||||| |||||||| ||||| | |||||| || ||||| | ||| ||| Sbjct 3390 AGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACGTT 3331 Query 13208 AGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaa 13267 | ||| |||| |||| ||||| | ||||||||| |||||||||| |||||||||| Sbjct 3330 AAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAAAA 3271 Query 13268 aaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC-ATACGTACTATTTTTACT 13326 || || ||||| || | ||||| || | | | ||| | || | || | || | Sbjct 3270 AAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCT-GTATTGTT 3212 Query 13327 CTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGC 13386 |||||||| | | ||||| |||||||||| || || || || | || ||||| Sbjct 3211 GTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATTGC 3152 Query 13387 GTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATA 13446 || | |||| | ||||| || ||| | || || || |||| | ||| Sbjct 3151 ATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGAATA 3092 Query 13447 CATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGA 13506 |||||| ||||| ||||||||||| || || || || ||||| || ||| | |||| Sbjct 3091 CATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTCTGG 3032 Query 13507 TACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 | |||||||| || | ||| | | ||| |||||||| || || || ||||| | Sbjct 3031 AATTTGAACTTCACGACT-AAAGCGTAGCATTAAATTTTCGTTTACAATACCATCACTGG 2973 Query 13566 CAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--TGACAACTTTAA 13623 |||||||||| || | | || | |||||| | | |||| | || ||| | | | Sbjct 2972 CAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACC--AAG 2915 Query 13624 CCAATCTGGAAAATCTTTTGATAAATCTACCTCCTC---AACGGTCCAAAAAGAAGCAAC 13680 |||||| | ||||| || ||||| || || || ||| |||||| || || || Sbjct 2914 CCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAAC---CCAAAATGAGGCCAC 2858 Query 13681 AGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 || ||||||||||| ||||| ||| | ||| ||| ||| | | ||| Sbjct 2857 TGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAAC 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427636122139542