Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq34585 174 4e-38 seq250674 152 1e-31 seq620319 122 2e-22 seq133437 116 8e-21 seq407716 109 1e-18 >seq34585 Length=75490 Score = 174 bits (192), Expect = 4e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || ||||| ||||| ||||| ||||| || || || | ||||| || Sbjct 7020 ACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCG 6961 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || ||||||||||| || || | ||| ||||| || || || ||||| || ||||| Sbjct 6960 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTGTCCTGG 6901 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||||||||| || ||||| | ||||||||| || |||||||||||||| || ||||| Sbjct 6900 ATCTTTGCTTTCACGTTTTCGATGGTATCGCTGGGCTCTACCTCTAGTGTGATGGTCTTG 6841 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || |||||||| Sbjct 6840 CCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || ||||| ||||| ||||| || || || | ||||| || Sbjct 7704 ACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCG 7645 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || ||||| ||||| || || | ||| ||||| || || || ||||| || ||||| Sbjct 7644 AGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTCCTTGTCCTGG 7585 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||||||||| |||||||| | |||||| || || |||||||||| ||| || ||||| Sbjct 7584 ATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCTACCTCTAATGTGATGGTCTTG 7525 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| |||||||| Sbjct 7524 CCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || ||||||||||| || ||||||||||| ||||| || || Sbjct 7935 AGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCC 7876 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||| ||||| || || || || ||||| || Sbjct 7875 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCT 7816 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || |||||||| ||||||||||| | || || || || || ||||| | ||| || || Sbjct 7815 TGGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTT 7756 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || |||||||| Sbjct 7755 TTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7724 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||| |||||||| || || ||||| || || || | ||||| Sbjct 7480 AAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTC 7421 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || |||||||| || || || | ||| ||||| || || || || || || || Sbjct 7420 CTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTC 7361 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| |||||||| ||||||||||| | || || || || || ||||| || || || || Sbjct 7360 CTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGT 7301 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 7300 TTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || ||||| ||||| ||||| || || || | ||||| Sbjct 7252 AAGCACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTC 7193 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || |||||||| || || || | ||| ||||| || || || || ||||| || Sbjct 7192 CTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTC 7133 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || |||||||| ||||||||||| | || || || || || ||||| || || || || Sbjct 7132 TTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGATGGT 7073 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 7072 TTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 7040 >seq250674 Length=71378 Score = 152 bits (168), Expect = 1e-31 Identities = 571/877 (65%), Gaps = 40/877 (5%) Strand=Plus/Plus Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 ||| ||||| ||||| || | || || || || |||||| | |||||||| ||| Sbjct 2831 GATGTATGGGAAATGTATAAGAAAGCAGTGGCCTCATTTTGGGTTACCGAAGAAGTGGAT 2890 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCT 268849 ||||| | ||| ||| |||||| | | | || |||||| ||||| | Sbjct 2891 TTGTCTAAAGACGTAAACGATTGGCTTGGTCTCACGGATGATGAAAGACATTTTATTTTG 2950 Query 268850 TATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909 || | | || |||||||| | ||||||||||| || ||||||||| || | | | | Sbjct 2951 TACGTGTTAGCCTTTTTTGCTGCCAGTGATGGTATTGTAAACGAAAATTTAAT-GCTACG 3009 Query 268910 -TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTAT 268968 || ||| || || || ||||| |||| | ||| || || ||||| ||||| || || Sbjct 3010 CTTTAGTCGTGAAGTTCAAATTCCAGAAGTCCGATACTTCTATGGATTTCAGATTGCCAT 3069 Query 268969 AGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAAC-A 269027 |||||||| ||||| || ||||| || | || || || || || | ||| | | Sbjct 3070 GGAAAATATCCATTCCGAAATGTATTCGCTGCTGATCGAAACGTACGTAAAAGATTCCAA 3129 Query 269028 ACGAAAAGAAAA---GACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaT 269084 || |||| || | || | | || | || || | | ||| | ||||||| Sbjct 3130 ACAAAAACAACATTTGATAAATGCAATCGAGGA-AATTCCG---TGTATTCAAAAAAAAG 3185 Query 269085 CTGAATGGGCTCTGAAATGGATA---AACGATAGCGCGCCTTACGGAGAAAGGTTAGTTG 269141 | ||||||| | | |||||| ||| ||| || || || | | |||| Sbjct 3186 CAAAATGGGCATTAGACTGGATAGACAACAATACAGCAAGTTTTGGTACCCGCCTTGTTG 3245 Query 269142 CTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGA 269201 | ||||||| || ||||| || || |||||||| | ||||| || || |||||| | | Sbjct 3246 CATTTGCCGTGGTGGAAGGCATTTTTTTTTCGGGTGCGTTTGCTGCCATATTTTGGCTAA 3305 Query 269202 AGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261 | || ||||| |||| || ||||| || | |||||| ||||||| | || || | Sbjct 3306 AAAAGAGAGGTAAATTGCCCGGTTTAACGTTTGCCAACGAACTGATAAGTCGCGATGAGG 3365 Query 269262 GTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAAC------ 269315 | || || || || || || ||| | || ||| || ||| | | | |||| Sbjct 3366 GATTGCATTGTGATTTTGCGTGTCTCCTA--TAC-AAGTATGTAAAAAATAAACCAGATA 3422 Query 269316 CTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTC 269375 | |||| ||| | || | || | || ||||||| | |||| ||||| Sbjct 3423 CGTCTC---ATA---TTTATCACATGGTTAATGAAGCTGTTGAGATTGAAAAGGAATTCT 3476 Query 269376 TAACGGAAGCTCTATCTAT-CGATCTTATCGGTATGAATAGCAAATC-GATGATAGAATA 269433 ||||||| || || || || || ||| ||||| || || |||| || |||| | | || Sbjct 3477 TAACGGATGC-CTTTCAATGCGCTCTAATCGGGATCAA-CGCAACTCTGATGGGACAGTA 3534 Query 269434 TATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAG---GGTTTAG-TAAAAAATATA 269489 ||| | || || | |||||| | || ||| || || | | ||| |||| Sbjct 3535 TATAGAATTTGTTGCCGATAGACTACT----ACTTGAGCTCGGATACGATAAGGTGTATA 3590 Query 269490 ACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCT 269549 | ||||| ||||| ||| |||||||| || || || || ||||| ||| ||||||| | Sbjct 3591 ATGTTGACAATCCATTTGACTTTATGGAAAACATTTCGTTGGAAGGCAAGACTAATTTTT 3650 Query 269550 TCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGT 269586 | || | || || | | ||||| ||||||||||| Sbjct 3651 TTGAAAGACGAGTTGGGGAATATCAAAAAATGGGTGT 3687 >seq620319 Length=78974 Score = 122 bits (134), Expect = 2e-22 Identities = 131/173 (76%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 269090 TGGGCTCTGAAATGGAT---AAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTT 269146 ||||| || || ||||| | |||| | || || ||| |||| ||||||| ||| Sbjct 15506 TGGGCGCTCAACTGGATCGCACACGACAAGGCTGATTTCGGTACAAGGGTAGTTGCATTT 15565 Query 269147 GCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAA 269206 ||||| ||||| || || ||||| || || || ||||| || ||||| |||||||||||| Sbjct 15566 GCCGCCGTAGAGGGAATCTTCTTCTCTGGCTCCTTTGCTGCCATCTTCTGGTTGAAGAAA 15625 Query 269207 AGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGA 269259 || || || ||||| ||| | || ||||| |||||| | || ||||| ||||| Sbjct 15626 AGGGGACTAATGCCCGGACTCACCTTCTCCAACGAACTTATCAGCAGAGACGA 15678 >seq133437 Length=111544 Score = 116 bits (128), Expect = 8e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || | ||||||||||| || |||||||| || ||||| || || Sbjct 106777 AGCACAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCC 106718 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||| |||| || | || || |||| || Sbjct 106717 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCT 106658 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || ||||||||||| | | || || || || ||||| ||||| || || Sbjct 106657 TGGATCTTCGCCTTTACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTT 106598 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || || ||||| Sbjct 106597 TTACCGGTGAGGGTCTTGACGAAGATTTGCAT 106566 >seq407716 Length=13296 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 269132 AGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATC 269191 ||| |||| || ||||| |||||||| || || ||||| || || || ||||| || ||| Sbjct 4713 AGGGTAGTCGCATTTGCTGCTGTAGAGGGAATCTTCTTCTCAGGCTCCTTTGCTGCCATC 4654 Query 269192 TTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGC 269251 || ||||||||||| || || || ||||| ||| | || ||||| |||||| | || ||| Sbjct 4653 TTCTGGTTGAAGAAGAGGGGACTAATGCCTGGACTCACCTTCTCCAACGAACTTATCAGC 4594 Query 269252 AGGGACGA 269259 || ||||| Sbjct 4593 AGAGACGA 4586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1142000142583268