Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq34585 107 2e-18 >seq34585 Length=75490 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTC 48573 ||||| | ||||||||| |||||| || || ||||| |||| || | || || | || Sbjct 6795 AACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGC-CATC 6737 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| |||||||| || || | || | ||||||||||| || | || ||||||||| Sbjct 6736 CTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTTGTC 6677 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || ||| | | | |||||||| ||| || ||| | ||| ||||| Sbjct 6676 CTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACCTCAAGTGTGATGGT 6617 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||||||||||||||| |||||||| Sbjct 6616 CTTGCCAGTGAGAGTTTTCACAAAGATCTGCAT 6584 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| | |||||| || |||||| || || ||||| || | || || ||||| Sbjct 7707 AACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCC 7648 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || | | || | |||||||||||| ||| | || |||||||||| Sbjct 7647 TCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGGATACCTTCCTTGTCC 7588 Query 48635 ATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || ||| || | | | |||||||| | | ||| ||| | ||| ||||| Sbjct 7587 TGGATCTT-TGCTTTCACATTTTCGATGGTATCACTGGGCTCTACCTCTAATGTGATGGT 7529 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| |||||||| Sbjct 7528 CTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| | |||||| || ||||| || || ||||| || | || || ||||| Sbjct 7023 AACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCC 6964 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || | | || | |||||||||||| || | || |||||||||| Sbjct 6963 TCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCTTCCTTGTCC 6904 Query 48635 ATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 || || |||| | ||| | ||||||||| | | ||| ||| | ||| || Sbjct 6903 TGGATCTT-TGCT---TTCACGTTTTCGATGGTATCGCTGGGCTCTACCTCTAGTGTGAT 6848 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || ||||| || ||||| || |||||||| Sbjct 6847 GGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417980478123071