Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq199961 199 6e-47 seq62684 199 6e-47 seq501752 190 3e-44 seq33424 188 1e-43 seq339688 185 1e-42 seq301890 168 1e-37 seq615254 165 1e-36 seq565496 113 7e-21 seq219707 111 2e-20 seq131094 91.5 2e-14 seq518428 84.2 3e-12 >seq199961 Length=44821 Score = 199 bits (220), Expect = 6e-47 Identities = 205/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || ||||||||||| |||||||||||||| ||||| Sbjct 21387 CGCCAAGCGTCATCGCAAGGTTTTGCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 21446 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || |||||||| ||||||||| || || | |||| ||||||| Sbjct 21447 CCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCAGCGGTCTCATCTACGAAGAGAC 21506 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | |||||| ||| ||| |||| |||||| || ||| ||| Sbjct 21507 CCGCGGAGTTCTGAAGGTTTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGA 21566 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| ||||||| || |||||||| || || Sbjct 21567 GCACGCAAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCCTTGAAACGCCAGGG 21626 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || ||||| ||||| Sbjct 21627 ACGTACTCTGTACGGATTTGGCGGTTAA 21654 >seq62684 Length=87171 Score = 199 bits (220), Expect = 6e-47 Identities = 207/269 (77%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | |||| || ||||||||||| |||||||||||||| |||| Sbjct 31486 CGCCAAGCGTCATCGCA-AGGTCTTGCGTGATAACATCCAGGGAATCACCAAGCCCGCTA 31428 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || |||||||| ||||||||| || || | |||| ||||||| Sbjct 31427 TCCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCAGCGGTCTCATCTACGAAGAGA 31368 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| ||||||| ||| ||| |||| |||||| || ||| || Sbjct 31367 CCCGCGGAGTTCTGAAGGTCTTCCTTGAGAACGTCATCCGTGATGCCGTCACCTACTGCG 31308 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| ||||||| || |||||||| || | Sbjct 31307 AGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCCTTGAAACGCCAGG 31248 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | || || || || ||||| Sbjct 31247 GACGTACTCTGTACGGATTCGGCGGTTAA 31219 >seq501752 Length=73662 Score = 190 bits (210), Expect = 3e-44 Identities = 203/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || ||||||||||| |||||||||||||| ||||| Sbjct 57411 CGCCAAGCGTCATCGCAAGGTTTTGCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 57470 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || |||||||| ||||||||| || || | |||| ||||||| Sbjct 57471 CCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCAGCGGTCTCATCTACGAAGAGAC 57530 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||||| ||| ||| |||| |||||| || ||| ||| Sbjct 57531 CCGCGGAGTTCTGAAGGTCTTCCTTGAGAACGTCATCCGTGATGCCGTCACCTACTGCGA 57590 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| ||||||| || ||||||| || || Sbjct 57591 GCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTGAAACGCCAGGG 57650 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 57651 ACGTACTCTGTACGGATTCGGCGGTTAA 57678 >seq33424 Length=15197 Score = 188 bits (208), Expect = 1e-43 Identities = 191/246 (78%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | |||| || ||||||||||| |||||||||||||| |||| Sbjct 8938 CGCCAAGCGTCATCGCA-AGGTCTTGCGTGATAACATCCAGGGAATCACCAAGCCCGCTA 8880 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || |||||||| ||||||||| || || | |||| ||||||| Sbjct 8879 TCCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCAGCGGTCTCATCTACGAAGAGA 8820 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| || |||| |||||| || ||| || Sbjct 8819 CCCGCGGAGTTCTGAAGGTTTTCCTTGAGAATGTCATCCGTGATGCCGTCACCTACTGCG 8760 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| ||||||| || |||||||| || | Sbjct 8759 AGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCCTTGAAACGCCAGG 8700 Query 16671 GCCGTA 16676 | |||| Sbjct 8699 GACGTA 8694 >seq339688 Length=67579 Score = 185 bits (204), Expect = 1e-42 Identities = 204/269 (76%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| || ||| | || ||||||||||| |||||||||||||| |||| Sbjct 14058 CGCCAAGCGTCATCGCAAGGTCT-TGCGTGATAACATCCAGGGAATCACCAAGCCCGCTA 14116 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| ||||||||||| ||||||||| || || | |||| ||||| | Sbjct 14117 TCCGCCGTCTGGCCCGTCGTGGTGGTGTCAAGCGTATCAGCGGTCTCATCTACGAAGAAA 14176 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| ||| |||| |||||| || ||| || Sbjct 14177 CCCGCGGAGTTCTGAAGGTTTTCCTTGAGAACGTCATCCGTGATGCCGTCACCTACTGCG 14236 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| ||||||| || |||| || || | Sbjct 14237 AGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTGAAGCGCCAGG 14296 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | || || || || ||||| Sbjct 14297 GACGTACTCTGTACGGATTCGGCGGTTAA 14325 >seq301890 Length=67060 Score = 168 bits (186), Expect = 1e-37 Identities = 201/269 (75%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||||| || || ||||||||||| || ||||| || ||||| || Sbjct 63824 GCTAAACGTCATCGCAAGGTACTGCGTGATAACATCCAGGGTATCACTAAACCAGCCATT 63883 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||| || ||||| ||| ||||||| | |||| ||||| | Sbjct 63884 CGTCGCTTGGCTCGTCGTGGCGGTGTCAAACGTATCTCTGGGCTCATCTACGAAGAAACA 63943 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 || | ||| |||| ||||| | ||| ||| |||| |||||| | |||| ||| || Sbjct 63944 CGCGGTGTCCTGAAAGTCTTCTTGGAGAACGTCATCCGAGATGCTGT-CACT-TACTGCG 64001 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| |||||||| || || |||||| ||||||| |||||||||| |||| | || | Sbjct 64002 AGCATGCTAAACGAAAAACGGTCACCGCCATGGACGTCGTCTATGCGCTGAAGAGACAGG 64061 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | || | | ||||| ||||| ||||| Sbjct 64062 GTCGCACCCTGTATGGATTTGGCGGTTAA 64090 Score = 136 bits (150), Expect = 6e-28 Identities = 174/228 (76%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| || | || || ||||||||||| || ||||| || ||||| || Sbjct 44982 GCTAAACGTCATCGAAGGTA-CTGCGTGATAACATCCA-GGTATCACTAAACCAGCCATT 45039 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||| || ||||| ||| ||||||| | |||| ||||| | Sbjct 45040 CGTCGCTTGGCTCGTCGTGGCGGTGTCAAACGTATCTCTGG-GTCATCTACGAAGAAACA 45098 Query 16553 CG-TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--C 16609 || | ||| |||| ||||| | ||| ||| |||| |||||| | |||| ||| | Sbjct 45099 CGACGGTGTCCTGAAAGTCTTCTTGGAGAACGTCATCCGAGATGCTGT-CACT-TACTGC 45156 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC-GTCTATGC 16656 ||||| |||||||| || || |||||| ||||||| || |||||||| Sbjct 45157 GAGCATGCTAAACG-AAAACGGTCACCGCCATGGACGTCTGTCTATGC 45203 Score = 87.8 bits (96), Expect = 3e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||| || ||||| || ||||| ||||||||||||| || Sbjct 24312 CGTGATAACATCCAGGGTATCACTAAACCAGCCATTCGTCGCTTGGCTCGTCGTGGCGGT 24371 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 ||||| ||| ||||||| | |||| ||||| | || | ||| ||||| Sbjct 24372 GTCAAACGTATCTCTGGGCTCATCTACGAAGAAACACGCGGTGTCCTGAAG 24422 >seq615254 Length=66304 Score = 165 bits (182), Expect = 1e-36 Identities = 166/213 (78%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | |||| || ||||||||||| |||||||||||||| |||| Sbjct 1623 CGCCAAGCGTCATCGCA-AGGTCTTGCGTGATAACATCCAGGGAATCACCAAGCCCGCTA 1565 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || |||||||| ||||||||| || || | |||| ||||||| Sbjct 1564 TCCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCAGCGGTCTCATCTACGAAGAGA 1505 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| ||| |||| |||||| || ||| || Sbjct 1504 CCCGCGGAGTTCTGAAGGTTTTCCTTGAGAACGTCATCCGTGATGCCGTCACCTACTGCG 1445 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGG 16643 ||||||| || | ||||| |||||| |||||| Sbjct 1444 AGCACGCCAAGAGAAAGACCGTCACCGCCATGG 1412 >seq565496 Length=1550 Score = 113 bits (124), Expect = 7e-21 Identities = 171/233 (73%), Gaps = 9/233 (4%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||||| || || | |||||||| || ||||| || | ||| || Sbjct 585 GCTAAACGTCATCGCAAGGTACTGCGTGTAAACATCCAGGGTATCACTAAAC-AGCCATT 643 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT-GTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||||||||||| || ||||| || ||||||| | |||| ||||| | Sbjct 644 CGTCGCTTGGCTCGTCGTGGCGGTGTCAAAGGTATTCTCTGGGCTCATCTACGAAGA-AA 702 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--C 16609 | | ||| |||| ||||| | ||| ||| |||| |||||| | |||| ||| | Sbjct 703 CAGCGGTGTCCTGAAAGTCTTCTTGGAGAACGTCATCCGAGATGCTGT-CACT-TACTGC 760 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||| |||||||| || || |||||| |||||| |||||||||| |||| Sbjct 761 GAGCATGCTAAACG-AAAACGGTCACC-GCATGGACGTCGTCTATGCGCTGAA 811 >seq219707 Length=403 Score = 111 bits (122), Expect = 2e-20 Identities = 85/98 (87%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | ||| | || ||||||||||| |||||||||||||| |||| Sbjct 288 CGCCAAGCGTCATCGCAAAGTCT-TGCGTGATAACATCCAGGGAATCACCAAGCCCGCTA 346 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 |||| |||||||| || |||||||| ||||||||| || Sbjct 347 TCCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATC 384 >seq131094 Length=19185 Score = 91.5 bits (100), Expect = 2e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || || || | | ||||||||||||||||| || |||||||| || || || Sbjct 13223 GCTAAACGACACCGTAAAGTGCTTCGAGATAACATCCAGGGTATCACCAAACCGGCCATT 13164 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||| ||||| |||||||| ||| | | ||||| | |||| || |||| Sbjct 13163 CGTCGCCTGGCCCGTCGGGGTGGAGTTAAGAGAATTTCTGGTCTCATCTACGAGGAGACG 13104 Query 16553 CGTGATGTTTTGAAG 16567 |||| || ||||| Sbjct 13103 CGTGGCGTACTGAAG 13089 >seq518428 Length=58876 Score = 84.2 bits (92), Expect = 3e-12 Identities = 170/238 (71%), Gaps = 16/238 (7%) Strand=Plus/Plus Query 16434 CTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCC 16493 |||| |||||||||| | | || ||||||||||| || ||||| || ||| | || | Sbjct 21868 CTAAACGTCATCGCA-AGGTAG-CGTGATAACATCCAGGGTATCACTAAACCA-CCAT-C 21923 Query 16494 GTCGTCTGGCTCGTCGTGGTGG--AGTCAAGCGTGTCTCTGG--ATTGGTCTATGAAGAG 16549 ||| | ||||||||||||| || |||| ||| | |||| | |||| |||||| Sbjct 21924 GTCCTTTGGCTCGTCGTGGCGGTTGCTCAAACGTATTCCTGGGCCTCCATCTACGAAGAG 21983 Query 16550 A--TTCGTGATGTTTTGAAGATCTTCCTCAAG-ACCGTTATCCATGATGCTTTCCACTAT 16606 | || | ||| |||| |||| | || | ||| |||| ||||| | |||| | Sbjct 21984 AACACCGCGGTGTCCTGAAAGCCTTCTTGGAGAAACGTCATCCGAGATGC--TGCACT-T 22040 Query 16607 ACCG-AGCACGCTAAACGTAAGACTGTC-ACCTCCATGGATATCGTCTATGCATTGAA 16662 || | |||| |||||||| || || ||| ||| ||||||| |||||||||| |||| Sbjct 22041 ACTGCAGCATGCTAAACGAAAAACGGTCAACCGCCATGGACGTCGTCTATGCGCTGAA 22098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78492721525203