Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq250674 279 5e-70 >seq250674 Length=71378 Score = 279 bits (308), Expect = 5e-70 Identities = 596/889 (67%), Gaps = 8/889 (1%) Strand=Plus/Minus Query 21179 CCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGAT 21238 |||||||||||||| || | ||||| | |||| |||||||| ||||| |||||||| || Sbjct 3684 CCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAACGAA 3625 Query 21239 ATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCT 21298 || ||||||||| ||||||||||| ||| ||| | | |||| | || || || Sbjct 3624 ATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGCTCA 3565 Query 21299 GATAATAATCTATCTGCTACAAATTCTATATATTGACACATTA-ATTCACAATTCATACC 21357 || || |||||| || |||||||||||||| || | ||| | | | | || || || Sbjct 3564 AGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG-TTGATCCC 3506 Query 21358 GATCA-ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAA 21416 ||| | | | | ||| || | || || || ||||| || || |||||| Sbjct 3505 GATTAGAGCGCATTGAAAG-GCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTTCAT 3447 Query 21417 CAATTATAT--TTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 || || | | | ||| ||| ||| || || || | || | | | Sbjct 3446 TAACCATGTGATAAATATG--AGACGTATCTGGTTTATTTTTTACATACTTGTATAGGAG 3389 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||| ||||||||||||||||| || ||||| | |||||| | ||| || | ||| ||||| Sbjct 3388 ACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGGCAAACGTTAA 3329 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 |||||||| | ||||||||||||| ||||||||| | ||||| || || ||||| || Sbjct 3328 ACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCACCCGAAAAAAA 3269 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 |||||| || || | ||||||||||| | || ||| | | | | || | Sbjct 3268 AATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTGTATTGTTGTC 3209 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 |||||| | | |||||||||||| |||| || |||||| |||| || || || || Sbjct 3208 TATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCTCGATTGCATT 3149 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || | ||| | ||||| | ||| ||| | |||||| Sbjct 3148 TATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCAGCGAATACAT 3089 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 ||| ||||| |||||||| || || ||||||||||| || || ||| | |||| | Sbjct 3088 TTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGACTTCTGGAAT 3029 Query 21835 TTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 |||||| || | ||| ||| | || ||||| ||||| || ||||||||||| || Sbjct 3028 TTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCATCACTGGCAGC 2969 Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC 21954 |||||| || || | | ||||||| || ||| | ||| || | |||||| Sbjct 2968 AAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGACCAAGCCAATC 2909 Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014 || ||||| || ||||| |||||||| || |||||| || | || || || Sbjct 2908 GTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCACTGCTTTCTT 2849 Query 22015 ATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTG 22063 |||||| ||| | ||| | |||| | |||||| | | ||||||||| Sbjct 2848 ATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCTG 2800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527665067818040