Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq250674 291 1e-73 seq620319 131 2e-25 seq407716 125 9e-24 >seq250674 Length=71378 Score = 291 bits (322), Expect = 1e-73 Identities = 612/909 (67%), Gaps = 25/909 (3%) Strand=Plus/Minus Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063 || ||||||||||| ||||| || || ||| |||| ||||||||||| || |||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123 || || |||||||| || ||||| |||||| ||||||||| | || | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCA---TTTCACAATTC 33180 ||| | | |||||| || || ||||||||||| | ||||| || | || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG---TTG 3511 Query 33181 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 33240 || || || || | ||| || | || | ||||| | |||||| || || Sbjct 3510 ATCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCT 3451 Query 33241 TC--------TGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTT 33292 || ||| |||| | || ||| | ||| ||| || || || | Sbjct 3450 TCATTAACCATGTGATAA-ATATGAGACG-TATCT------GGTTTATTTTTTACATACT 3399 Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 | | | | ||| || ||||| || |||| ||||| || | ||| || |||||||||| Sbjct 3398 TGTATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGG 3339 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33412 |||||| | ||||||| | || | |||||| ||||||||||||| ||| || | | Sbjct 3338 CAAACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCAC 3279 Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33472 | ||||| || || ||||| || | ||||| |||| ||| | ||| ||| || Sbjct 3278 CCGAAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTG 3219 Query 33473 T---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 | || | |||||| | | ||||| | || || |||| | ||| || || | Sbjct 3218 TATTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCT 3159 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | || ||||| | | || | ||||| || |||||| || || || ||||||| | Sbjct 3158 CGATTGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCA 3099 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 | ||||||||| ||||| || ||||| ||||| ||||||||||| ||||| ||| Sbjct 3098 GCGAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGA 3039 Query 33650 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGT 33709 | || | ||| || ||||| || ||| ||| | |||||||| || || || || | Sbjct 3038 CTTCTGGAATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCAT 2979 Query 33710 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 33769 ||||||| |||||||| || || || | ||||||| | |||| || || || Sbjct 2978 CACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGAC 2919 Query 33770 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 33829 | |||||| || | |||||||| | ||| |||||||| ||||||||| ||| Sbjct 2918 CAAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCA 2859 Query 33830 CTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTAT 33889 |||| || |||||||| | ||| | || | ||||| ||||| ||| |||||| || Sbjct 2858 CTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCTGG 2799 Query 33890 TTGGATTTG 33898 ||||||| Sbjct 2798 CAGGATTTG 2790 >seq620319 Length=78974 Score = 131 bits (144), Expect = 2e-25 Identities = 163/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || ||||||||||| || ||||||||||||||||| || | || | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || |||| ||| || || ||||| ||||||||||| ||||| || ||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33502 ||| | || || || | || |||| ||| ||||| || | ||||| | | Sbjct 15560 CAACTACCCTTGTACCGAAATCAGCCTTGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 15501 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 ||||||| ||||||| || | || || || || || || || Sbjct 15500 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 15458 >seq407716 Length=13296 Score = 125 bits (138), Expect = 9e-24 Identities = 162/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || ||||||||||| || |||||||| |||||||| || | ||| | Sbjct 4584 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCAGGCATTAGTCCCCTCTTCT 4643 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || |||| ||| || || || || ||||||||||| ||||| |||||||| | Sbjct 4644 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAGAAGAAGATTCCCTCTACAGCAGCAAATG 4703 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 33502 | | | ||| || || | || ||| ||| ||||| || | ||||| | | Sbjct 4704 CGACTACCCTCGTCCCGAAATCAGCCTCGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 4763 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 ||||||| ||||||| || | || || || || || || || Sbjct 4764 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 4806 Score = 114 bits (126), Expect = 2e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||| ||||||||| || || ||||||||||||||||| || ||||| || ||| || | Sbjct 6534 CCAGATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATGA 6593 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 | | || || | || || || ||||| | | ||| || || | || || | Sbjct 6594 AGTGCTTCTCATTCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGACCT 6653 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 ||||| | ||||| || || ||||| || || || ||||||| ||||||||| | ||| | Sbjct 6654 CTTCCGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATACT 6713 Query 33866 GGATTGGGAAAATAACAAATCTATTTGGATT 33896 |||| ||||| || ||||| || |||| || Sbjct 6714 GGATGGGGAAGATGACAAACCTCCTTGGGTT 6744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617986430054360