Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq259514 113 4e-20 seq373107 98.7 9e-16 seq250674 91.5 1e-13 >seq259514 Length=44100 Score = 113 bits (124), Expect = 4e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 |||||||| || ||||||| || ||||||||||||||||| ||||| ||||| |||||| Sbjct 39380 GAGGGTAAGATGCACGGATTTCTTCGCATGTACTGGGCCAAGAAGATCCTCGAATGGACT 39321 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | | || ||||||||||| | | ||||| || ||||| | ||| || ||| Sbjct 39320 GCATCGCCGACAGAGGCGCTCGAGATTGCCATTTACCTCAACGACAAGTACTCGCTGGAC 39261 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGT 71863 || |||||||| |||||||| || ||| Sbjct 39260 GGGCGCGATCCCAACGGTTACGTGGGT 39234 >seq373107 Length=46510 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 |||||||| || ||||||| || ||||||||||||||||| ||||| ||||||||||| Sbjct 27591 GAGGGTAAGATGCACGGATTTCTCCGCATGTACTGGGCCAAGAAGATCCTCGAGTGGACC 27650 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | | || | ||||||| ||| | ||||| || || || | ||| || ||| Sbjct 27651 GCATCGCCGACGGAGGCGCTGGAGATCGCCATTTACCTCAATGACAAGTACTCGCTGGAC 27710 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGT 71863 || ||||| || |||||||| || ||| Sbjct 27711 GGACGCGACCCCAACGGTTACGTGGGT 27737 >seq250674 Length=71378 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 119646 TACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATA 119705 || || || || ||| |||||||||||||||||||||| || | || ||||| | |||| Sbjct 3672 TATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAACGAAATGTTTTCCATA 3613 Query 119706 AACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGA 119765 || || || ||||| || || | ||| ||||| || | ||| | | |||| | Sbjct 3612 AAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGCTCAAGTAGTAGTCTA 3553 Query 119766 TCTGCCACAAACTCGATGTATTCGCACAT--GGATTGCGAATTCATGCCCAACATAGCGA 119823 || || ||||| || || || | | ||| | ||||| || || || | | |||| Sbjct 3552 TCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG--TTGATCCCGATTAGAGCGC 3495 Query 119824 CCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 | || |||| || ||||| ||||||||||| || || ||||| Sbjct 3494 ATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCTTC 3449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474850625827120