Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq250674 143 7e-29 seq251981 87.8 5e-12 >seq250674 Length=71378 Score = 143 bits (158), Expect = 7e-29 Identities = 313/460 (68%), Gaps = 13/460 (3%) Strand=Plus/Plus Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || ||| |||||||||| ||||| ||||||||||| ||||| || || ||| ||| || Sbjct 3236 CGCCTTGTTGCATTTGCCGTGGTGGAAGGCATTTTTTTTTCGGGTGCGTTTGCTGCCATA 3295 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 |||||||||||||| | | | |||| ||| |||||||| | || || | || || Sbjct 3296 TTTTGGCTAAAAAAGAGAGGTAAATTGCCCGGTTTAACGTTTGCCAACGAACTGATAAGT 3355 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 || |||||||| | ||| |||||||||||| | ||||| || || | | || Sbjct 3356 CGCGATGAGGGATTGCATTGTGATTTTGCGTGTCTCCTATA---CAAGTATGTAAAAAAT 3412 Query 22672 AAAC---TTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGT 22728 |||| | | | | | | | || | | || ||| | || ||||| ||||| Sbjct 3413 AAACCAGATACGTCTCATA-TTTA--TCACATGGTTAATGAAGCTGTTGAGATTGAAAAG 3469 Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC-AATGAG 22787 ||| | || || || | | ||| || || ||||| | | | || ||| | Sbjct 3470 GAATTCTTAACGGATGCCTTTCAATGCGCTCTAATCGGGATCAACG-CAACTCTGATG-G 3527 Query 22788 TACA-TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATT 22846 ||| ||||| |||||||||| ||| | ||| || || ||||| || | ||| | Sbjct 3528 GACAGTATATAGAATTTGTTGCCGATAGACTACTACTTGAGCTCGGATACGATAAGGTGT 3587 Query 22847 ATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATT 22906 |||| || | ||||||||||| | |||||| ||||| | ||||| ||||| |||| Sbjct 3588 ATAATGTTGACAATCCATTTGACTTTATGGAAAACATTTCGTTGGAAGGCAAGACTAATT 3647 Query 22907 TCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGT 22946 | || |||| | ||||||| ||||| |||||| ||||| Sbjct 3648 TTTTTGAAAGACGAGTTGGGGAATATCAAAAAATGGGTGT 3687 >seq251981 Length=36728 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || |||| || |||| ||| |||| || || |||| ||||| || || ||||| ||| Sbjct 20780 GCCCAGAGTCTGTGGTACGCCGTCATTGAATCCCAGACAGAGACGGGTACTCCCTACATG 20721 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| || |||||||||||| |||||||||| |||| || || || || Sbjct 20720 GTCTACAAGGACCATTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGC 20661 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||||| || || ||||| |||| ||| || Sbjct 20660 AGTAACCTCTGCACGGAGATCGTTGAGTACTCC 20628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1292715012489522