Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq34585 113 4e-20 seq133437 95.1 1e-14 seq457253 93.3 4e-14 seq364598 89.7 5e-13 seq156656 89.7 5e-13 seq407716 86.0 6e-12 seq620319 82.4 7e-11 >seq34585 Length=75490 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | ||| | || ||||| || ||||||||||| || Sbjct 7951 GCCACCACGGAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGA 7892 Query 131067 CATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||| | || | ||||| ||||||||||| ||| |||| | ||||||||| || || | Sbjct 7891 TAGGGTTCTGCCA-TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTG 7833 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || |||||||| ||| || ||| | | || | ||| || | | ||| | Sbjct 7832 GGATACCCTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCCA 7773 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||||||||| || || || ||||| |||||||| Sbjct 7772 CCTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7724 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | ||| | || |||||||| || || ||||| || | Sbjct 6810 CCACCACGGAGACGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGAC 6751 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||| || || ||| Sbjct 6750 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGG 6691 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | ||||| | | |||| Sbjct 6690 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACC 6631 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | || | ||| || || || |||||||| || || |||||||||| Sbjct 6630 TCAAGTGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCATGA 6582 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | ||| | ||||||||||| || || ||||| || | Sbjct 7722 CCACCACGGAGACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGAC 7663 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| ||||| |||| | ||||||||| || || ||| Sbjct 7662 AGGGTACGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGG 7603 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| || | | || | ||||| ||| ||| | Sbjct 7602 ATACCTTCCTTGTCCTGGATCTT-TGCTTTCACATTTTCGATGGTATCACTGGGCTCTAC 7544 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || || || |||||||| Sbjct 7543 CTCTAATGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 >seq133437 Length=111544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | | | ||||| | ||| | || | ||| || ||||||||||| || Sbjct 106793 GCCACCACGAAGATGGAGCACAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGA 106734 Query 131067 CATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||| | || | ||||| ||||||||||| ||| |||| | ||||||||| | || Sbjct 106733 CAGGGTTCTGCCA-TCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTT 106675 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || |||| ||| ||| ||| ||| | | || | | | || | | ||| | Sbjct 106674 GGATACCCTCTTCGTCTTGGATCTTCGCCTTTACATTTTCAATAATGTCACTTGGCTCCA 106615 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||||||||| || || || ||||| || ||||| Sbjct 106614 CCTCCAGTGTGATGGTTTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 106566 >seq457253 Length=850 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 46367 TCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGC 46426 ||| ||| || |||||||| || ||||||| || || | ||| || ||| ||||||| Sbjct 438 TCAGGGAAGCCGTGGCCATCGAACAGGAGTTCTTGACCGACGCCCTCCCCTGTGCCCTGA 379 Query 46427 TGGGCATGAACGCACAGTCA-ATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTC 46485 | ||||||||||| |||||| ||| | |||||||||||||| || ||| ||||||| Sbjct 378 TCGGCATGAACGC-CAGTCACATGAAGCAGTACATCGAGTTTGTTGCCGACAGACTGCTA 320 Query 46486 GTGCAGCT 46493 || |||| Sbjct 319 CTGGAGCT 312 >seq364598 Length=45638 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 145109 GTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATG 145168 ||| | || || | ||||||||| ||||| ||||| || || || | ||||| |||||| Sbjct 3284 GTGTACGGCTCGATAGACTCGTTGTTGCCAAGGATCTGGGCAGTGGAAGCGGTCGGCATG 3225 Query 145169 TACGCCACCA--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTAC 145226 |||| | | | || ||||| ||||||||||| |||||| |||| |||| Sbjct 3224 GGAGCCAGGAGCAGACTG--TTGCGGAGGCCGTGCTTGGCGATGTCGGCCTTCAGCGCCG 3167 Query 145227 CCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAAT 145278 |||| || || || ||| | ||| |||||||||||||||||||||| Sbjct 3166 CCCAGTCGTGGAGGTCGGTGGGCGTGACGCCCCACATGTCGTACTGCAAAAT 3115 >seq156656 Length=67780 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | | ||| || | ||| | ||| |||||||| ||||||||||| || Sbjct 29891 GCCACCACGGAGCCTCAGTACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGA 29832 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | |||||||||||| ||||| Sbjct 29831 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 29772 Query 131127 GATTCCT 131133 || ||| Sbjct 29771 AATGCCT 29765 >seq407716 Length=13296 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 46367 TCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGC 46426 ||| ||| || |||||||| || ||||||| | || | ||| || ||| ||||||| Sbjct 3903 TCAGGGAAGCCGTGGCCATCGAACAGGAGTTCCTGACCGACGCCCTCCCCTGTGCCCTGA 3844 Query 46427 TGGGCATGAACGCACAGTCA-ATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCT 46484 | ||||||||||| |||||| ||| | |||||||||||||| || ||| ||||||| Sbjct 3843 TCGGCATGAACGC-CAGTCACATGAAGCAGTACATCGAGTTTGTTGCCGACAGACTGCT 3786 >seq620319 Length=78974 Score = 82.4 bits (90), Expect = 7e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 46367 TCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGC 46426 ||| ||| || |||||||| || ||||||| | || | ||| || ||| |||||| Sbjct 16393 TCAGGGAAGCCGTGGCCATCGAACAGGAGTTCCTGACTGACGCTCTCCCCTGCGCCCTGA 16452 Query 46427 TGGGCATGAACGCACAGTCA-ATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCT 46484 | ||||||||||| |||||| ||| | |||||||||||||| || ||| ||||||| Sbjct 16453 TTGGCATGAACGC-CAGTCACATGAAGCAGTACATCGAGTTTGTTGCCGACAGACTGCT 16510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468253979168640