Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq34585 102 7e-17 seq156656 82.4 6e-11 >seq34585 Length=75490 Score = 102 bits (112), Expect = 7e-17 Identities = 167/238 (70%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 16703 ATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTG 16759 |||||| || || || || | || || | ||| || |||||||| || || |||||| Sbjct 7959 ATTTACTGGCCACCACGGAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTG 7900 Query 16760 TAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGG 16819 ||||| | | |||| || | ||||| | || ||||| || | || || ||||| || Sbjct 7899 TAGTCAGATAGGGTTCTGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGA 7840 Query 16820 TCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGC 16877 || || | ||||||||||| || ||||| ||| || | | | |||||| | Sbjct 7839 TCTGGTGGGATACCCTCTTTGTCTTGGATCTTTGC--CTTTACATTTTCAATAGTGTCAC 7782 Query 16878 CGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| |||| ||||||||||| ||||| || || ||||| || |||||||| Sbjct 7781 TCGGCTCCACCTCCAATGTGATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || |||||||| || || |||||||| | || ||| | ||||| Sbjct 7251 AGCACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCC 7192 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || ||||| || || || | ||||||||||| Sbjct 7191 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCT 7132 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | |||||| | |||||| || | ||||||| Sbjct 7131 TGGATCTTTGC--CTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGATGG 7074 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || ||||| || |||||||| Sbjct 7073 TTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 7040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || ||||| || || ||||||||||| | || ||| | ||||| Sbjct 7479 AGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCC 7420 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || ||||| || || || | ||||| ||||| Sbjct 7419 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCC 7360 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | |||||| | |||||| |||| ||||||| Sbjct 7359 TGGATCTTTGC--CTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGG 7302 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || ||||| || || || |||||||| Sbjct 7301 TTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 >seq156656 Length=67780 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||||||||| | ||| || ||||||||||| || ||||||||||| | | Sbjct 29890 CCACCACGGAGCCTCAGTACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAC 29831 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | | || |||| || ||||| ||| | || || ||||| ||||| Sbjct 29830 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 29778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401942774102290