Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq424217 140 2e-28 seq605934 132 3e-26 seq434814 107 1e-18 seq239345 107 1e-18 seq113065 105 4e-18 >seq424217 Length=14372 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2442 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2383 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2382 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2348 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 9365 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9306 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 9305 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9271 >seq605934 Length=36846 Score = 132 bits (146), Expect = 3e-26 Identities = 84/91 (92%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 |||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 28398 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAAT 28339 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||||||||||||||||||||||||||| Sbjct 28338 CCATTCATGCGCGTCACTAATTAGATGACGA 28308 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 4364 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGATATCGGTCTCGT 4423 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 4424 GCCAGTATTTAGCCTT 4439 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 26006 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGATATCGGTCTCGT 25947 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 25946 GCCAGTATTTAGCCTT 25931 >seq434814 Length=32496 Score = 107 bits (118), Expect = 1e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || ||||| || || ||||| ||||| || || || ||||||||| || || | Sbjct 29979 CCAACAAAATACTTTGGCTGCGAGCTTGGTGCACAAACCCAGTTTGATTTTAAGAATAAT 30038 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 ||||||||||| |||||||| ||| || || ||||||||| || | ||||| ||||| Sbjct 30039 CGCTTCATCGTCAACGGATCACATGACGCTAACAAGCTGCAAGATCTTCTTGATGGCTTC 30098 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || | || | |||||| || | ||||| || ||||| || || Sbjct 30099 ATCAGGAAATATGTGCTCTGCCCTGAATGTGACAACCCAGAAAC 30142 >seq239345 Length=9917 Score = 107 bits (118), Expect = 1e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || ||||| || || ||||| ||||| || || || ||||||||| || || | Sbjct 9317 CCAACAAAATACTTTGGCTGCGAGCTTGGTGCACAAACCCAGTTTGATTTTAAGAATAAT 9258 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 ||||||||||| |||||||| ||| || || ||||||||| || | ||||| ||||| Sbjct 9257 CGCTTCATCGTCAACGGATCACATGACGCTAACAAGCTGCAAGATCTTCTTGATGGCTTC 9198 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || | || | |||||| || | ||||| || ||||| || || Sbjct 9197 ATCAGGAAATATGTGCTCTGCCCTGAATGTGACAACCCAGAAAC 9154 >seq113065 Length=6675 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 727 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGATATCGGTCTCGT 786 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 787 GCCAGTATTTAGCCTT 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 332346568513001