Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq250674 307 1e-78 seq620319 131 2e-25 seq407716 104 3e-17 >seq250674 Length=71378 Score = 307 bits (340), Expect = 1e-78 Identities = 609/898 (68%), Gaps = 25/898 (3%) Strand=Plus/Minus Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420 || ||||||||||| ||||| || || ||| |||| ||||||||||| || ||||| || Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 || || |||||||| || || ||||||||| ||||||||| | || | |||| | Sbjct 3627 GAAATGTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAGC 3568 Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCA---TTTCACAATTC 32537 ||| | | |||||| || |||||||||||||| | ||||| || | || Sbjct 3567 TCAAGTAGTAGTCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG---TTG 3511 Query 32538 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 32597 || || || || | ||| || | || | ||||| | |||||| || || Sbjct 3510 ATCCCGATTAGAGCGCATTGAAAGGCATCCGTTAAGAATTCCTTTTCAATCTCAACAGCT 3451 Query 32598 TC--------TGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTT 32649 || ||| |||| | || || || ||| ||| || || || | Sbjct 3450 TCATTAACCATGTGATAA-ATATGAGAC-GTATCT------GGTTTATTTTTTACATACT 3399 Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709 | | | | ||| || ||||| || || | ||||| || | ||| || | |||||||| Sbjct 3398 TGTATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGG 3339 Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 32769 |||||| | ||||||| | || | |||||| ||||||||||||| ||||| | | Sbjct 3338 CAAACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCAC 3279 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 32829 | ||||| ||||| ||||| || | ||||| |||| ||| | ||| ||| || Sbjct 3278 CCGAAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTG 3219 Query 32830 T---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 | || | |||||| | | ||||| | || || |||| | ||| || ||| || Sbjct 3218 TATTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCT 3159 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | || ||||| | | || | ||||| || |||||| || || || || |||| | Sbjct 3158 CGATTGCATTTATCAAATGTTGTTTTTGTTTGGAATCTTTTACGTACGTTTCGATCAGCA 3099 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 | ||||||||| ||||| || ||||| ||||| || |||||||| |||||| ||| Sbjct 3098 GCGAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTATCGGA 3039 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 | || | ||| || ||||| || ||| ||| ||||||||| || || || || | Sbjct 3038 CTTCTGGAATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATACCAT 2979 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 33126 ||||||| |||||||| || || || | ||||||| | |||| || || || Sbjct 2978 CACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTGAGAC 2919 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 | |||||| || | |||||||| | |||||||||||| ||||||||| ||| Sbjct 2918 CAAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAGGCCA 2859 Query 33187 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 |||| || |||||||| | ||| | || ||||||| ||||||| ||| |||||| || Sbjct 2858 CTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAACCT 2801 >seq620319 Length=78974 Score = 131 bits (144), Expect = 2e-25 Identities = 163/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| || || | ||||||||| || ||||||||||||||||| || | || | Sbjct 15680 CCTCGTCTCTGCTGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATTAGTCCCCTTTTCT 15621 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| || |||| ||||| || ||||| ||||| ||||| ||||| || ||||| | Sbjct 15620 TCAACCAGAAGATGGCAGCAAAGGAGCCAGAGAAGAAGATTCCCTCTACGGCGGCAAATG 15561 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 32859 ||| | || || || | || |||| ||| ||||| || | ||||| | | Sbjct 15560 CAACTACCCTTGTACCGAAATCAGCCTTGTCGTGTGCGATCCAGTTGAGCGCCCACTGTG 15501 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 ||||||| ||||||| || | ||||| ||||| || || || Sbjct 15500 CCTTCTTGGTTACACACGGAAGAGTCTCGATAGCGTTGAACAG 15458 >seq407716 Length=13296 Score = 104 bits (114), Expect = 3e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 33047 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33106 ||||||||| || || ||||||||||||||||| || ||||| || ||| || || | Sbjct 6538 ATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATGAAGTG 6597 Query 33107 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 || || | || || || ||||| | | ||| || || | || || ||||| Sbjct 6598 CTTCTCATTCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGAGAGGTCGACCTCTTC 6657 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 33226 | | ||||| || || ||||| || || || ||||| | ||||||||| ||||| || || Sbjct 6658 CGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGATACTGGAT 6717 Query 33227 TGGAAAAATAACAAATCTATTTGGATT 33253 || || || ||||| || |||| || Sbjct 6718 GGGGAAGATGACAAACCTCCTTGGGTT 6744 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| || ||||| |||||||| || ||||| | |||||||| || || || || ||||| Sbjct 3046 CATGACACCCATCTTTTGGTACTCTCCCACCCTCTTTTCGAAGAAGTTCGTCTTGCCTTC 3105 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 | ||| || || |||||||| ||||||||||| Sbjct 3106 CAGTGAGATGTTCTCCATGAAGTCGAATGGATT 3138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628586142851600