Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq250674 289 3e-73 seq620319 131 2e-25 seq407716 127 2e-24 seq496440 93.3 5e-14 seq320776 93.3 5e-14 >seq250674 Length=71378 Score = 289 bits (320), Expect = 3e-73 Identities = 611/899 (68%), Gaps = 32/899 (4%) Strand=Plus/Minus Query 92794 ACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAA 92853 ||||| |||||| |||||||||||| | ||||||| ||||| ||||| |||||||| Sbjct 3687 ACACCCATTTTTTGATATTCCCCAACTCGTCTTTCAAAAAAATTAGTCTTGCCTTCCAAC 3628 Query 92854 GATATCGAATTCACTAGTG---ATTGGATTCTTGGCGTTATAATACTTTTCA---CCGA- 92906 || || | ||| || | | |||||| | | ||||| ||| || |||| Sbjct 3627 GAAAT-GTTTTCCATAAAGTCAAATGGATTGTCAACATTATACACCTTATCGTATCCGAG 3569 Query 92907 -TCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 |||| | ||| |||||| || ||||||||||| ||||| ||||| | Sbjct 3568 CTCAAGTAGTAG-----TCTATCGGCAACAAATTCTATATACTGTCCCATCAGAGTTGCG 3514 Query 92966 TTCATTCCTAGAAGA-CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 || || || | ||| || | | || || || || ||||| || || || || |||| Sbjct 3513 TTGATCCCGATTAGAGCGCATTGAAAG-GCATCCGTTAAGAATTCCTTTTCAATCTCAAC 3455 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCT---AC-TATTTGGTGGTTTTTGTACGACATAAT 93080 ||||| || | || | || | | | || ||| |||| |||| | ||||| | Sbjct 3454 AGCTTCATTAACCATGT-GATAAATATGAGACGTATCTGGTTTATTTTTT---ACATACT 3399 Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| | | |||||||| || ||| || || || || || ||||| || ||| Sbjct 3398 TGTATAGGAGACACGCAAAATCACAATGCAATCCCTCATCGCGACTTATCAGTTCGTTGG 3339 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 || |||||||| || || |||| || || ||||||||||| | |||||| || Sbjct 3338 CAAACGTTAAACCGGGCAATTTACCTCTCTTTTTTAGCCAAAATATGGCAGCAAACGCAC 3279 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | |||||||| || |||||||| | |||||||| |||| || ||||| |||| | Sbjct 3278 CCGAAAAAAAAATGCCTTCCACCACGGCAAATGCAACAAGGCGGGTACCAAAACTTGCTG 3219 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 ||| || ||||| | ||| ||||| | |||||||| | |||||| || | | | Sbjct 3218 TATTGTTGTCTATCCAGTCTAATGCCCATTTTGCTTTTTTTTGAATACACGGAATTTCCT 3159 Query 93321 CGATAGCGTT----AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 |||| || || |||| | | | | | | | |||||| || ||| || ||||| Sbjct 3158 CGATTGCATTTATCAAAT-GTTGTTTTTGTTTG---GAATCTTTTACGTACGTTTCGATC 3103 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | ||| ||||||||||| ||||||| ||| ||||| ||||| || ||||| ||||| || Sbjct 3102 AGCAGCGAATACATTTCGGAATGGATATTTTCCATGGCAATCTGAAATCCATAGAAGTAT 3043 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | |||| | || || ||||| || ||| | | | |||||| || || ||| Sbjct 3042 CGGACTTCTGGAATTTGAACTTCACGACTAAAGCGTAGCATTAAATTTTCGTTTACAATA 2983 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| || |||||||| || || | | | ||||||||| | |||||||| | Sbjct 2982 CCATCACTGGCAGCAAAAAAGGCTAACACGTACAAAATAAAATGTCTTTCATCATCCGTG 2923 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 || | ||||||| || ||||| || | ||| ||||||||| | |||||| || Sbjct 2922 AGACCAAGCCAATCGTTTACGTCTTTAGACAAATCCACTTCTTCGGTAACCCAAAATGAG 2863 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || ||||||| || ||||| ||||||| || ||||||| ||||||| | | ||||| Sbjct 2862 GCCACTGCTTTCTTATACATTTCCCATACATCGTGATATTTAATTGGATAAAGAACAAA 2804 >seq620319 Length=78974 Score = 131 bits (144), Expect = 2e-25 Identities = 175/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 93468 ATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATAT 93527 ||| ||| || |||||||||||||| || || || |||||| || || ||||| | || Sbjct 13708 ATCACTC-ACCAGATTTTCATTGACGATGCCGTCACTTGCTGCGAAGAATGCCAAGACAT 13650 Query 93528 GCTTTATAAAATGTTTCTCATCATCTT--TAAGCTTATCCCAATCGGATAGATCTTTTGA 93585 | || || || ||||||| |||| | ||||| |||||| ||||| || || Sbjct 13649 GTGAGATGAAGTGCTTCTCAT--TCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGA 13592 Query 93586 AAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || ||||| ||||| | ||||| |||||||| || ||||| |||||||| | ||| || Sbjct 13591 GAGGTCGACCTCTTCCGCTGTCCAGAACGATGCCTCGGCTTTCTTGTACATGTGCCAGAT 13532 Query 93646 GTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 ||| ||||| || || || || ||||| || | | ||||| ||| |||||| || || Sbjct 13531 GTCGTGATACTGGATGGGGAAGATGACGAACCTCCTTGGGTTCTCTCGTAGTAAAGGTTC 13472 >seq407716 Length=13296 Score = 127 bits (140), Expect = 2e-24 Identities = 174/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 93468 ATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATAT 93527 ||| ||| || |||||||||||||| || || || |||||||| || ||||| | | Sbjct 6526 ATCACTC-ACCAGATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGT 6584 Query 93528 GCTTTATAAAATGTTTCTCATCATCTT--TAAGCTTATCCCAATCGGATAGATCTTTTGA 93585 | || || || ||||||| |||| | ||||| |||||| ||||| || || Sbjct 6585 GTGAGATGAAGTGCTTCTCAT--TCTTCGTCAGCTTTGCCCAATGTTCCAGATCCTTGGA 6642 Query 93586 AAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || ||||| ||||| | ||||| ||||| || || ||||| |||||||| | ||| || Sbjct 6643 GAGGTCGACCTCTTCCGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGAT 6702 Query 93646 GTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 ||| ||||| || || || || |||||||| | | ||||| ||| |||||| || || Sbjct 6703 GTCGTGATACTGGATGGGGAAGATGACAAACCTCCTTGGGTTCTCTCGTAGTAAAGGTTC 6762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||| ||||| | | || |||||||| || |||| || || |||||||| ||| Sbjct 5353 ATGTATGTGTCGATGAGTAATGAGTACATTTCTGAGTGGATGTTTTCGATTGCAATCTGG 5412 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || ||||||||||| || || || | | ||| |||||||| |||||||| || Sbjct 5413 AACCCGTAGAAACACCTTGCCTCGGCAACCTGAACTTCTTGGCTGAATCTCTCAAC 5468 >seq496440 Length=42271 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 |||||||||||| ||||| || || ||||| | || |||| ||||| || |||||| Sbjct 24831 CTCCATTGCAATCTGGAAGCCATAAAAACACTTCGCCTCCGGTATCTGGACCTCTTGACT 24890 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 ||||| || || ||||| || ||||| || |||||| || || || || ||||| | Sbjct 24891 GAATCTTTCCACCAGATTCTCGTTGACGATTCCATCGCTGGCAGCGAAGAAGGCCAAGAC 24950 Query 93526 ATGCTTTATAAAATGTTTCTC 93546 ||| | | ||| |||||||| Sbjct 24951 ATGGCTGACAAAGTGTTTCTC 24971 >seq320776 Length=21916 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 |||||||||||| ||||| || || ||||| | || |||| ||||| || |||||| Sbjct 20701 CTCCATTGCAATCTGGAAGCCATAAAAACACTTGGCCTCCGGTATCTGGACCTCTTGACT 20760 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 ||||| || || ||||| || ||||| || |||||| || ||||| || ||||| | Sbjct 20761 GAATCTTTCCACCAGATTCTCGTTGACGATTCCATCGCTGGCAGCAAAGAAGGCCAAGAC 20820 Query 93526 ATGCTTTATAAAATGTTTCTC 93546 ||| | | ||| || ||||| Sbjct 20821 ATGGCTGACAAAGTGCTTCTC 20841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552426301666040