Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq34585 113 4e-20 seq133437 95.1 1e-14 >seq34585 Length=75490 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||||||||| |||| | || ||||| | | Sbjct 7724 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATCACATTGGAGGTGGAGCCGAGT 7783 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||| || |||||||| |||||||| ||||| ||||| Sbjct 7784 GACACTATTGAAAATGTAAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 7843 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| | | ||| | || || |||||| Sbjct 7844 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGAACCCTATCTGACTACAAC 7903 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| ||||| ||||| | ||| | ||| Sbjct 7904 ATTCAGAAAGAGTCCACTCTCCATCTTGTT 7933 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || |||| || ||||| ||||||| || ||||| | | Sbjct 7268 ATGCAGATCTTCGTGAAGACGCTAACTGGCAAAACCATCACTCTGGAGGTGGAGCCAAGT 7327 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||| || || |||||||||||||| ||||| ||||| Sbjct 7328 GACACTATTGAAAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATCCCACCAGATCAG 7387 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| ||| ||| | || || |||||| Sbjct 7388 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTGTCAGACTACAAC 7447 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| || || Sbjct 7448 ATCCAGAAAGAGTCTAC 7464 >seq133437 Length=111544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||||||||| |||| || || ||||| | | Sbjct 106566 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAAACCATCACACTGGAGGTGGAGCCAAGT 106625 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || || || |||||| | |||||||| | ||| |||| Sbjct 106626 GACATTATTGAAAATGTAAAGGCGAAGATCCAAGACGAAGAGGGTATCCAACCACATCAG 106685 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| | | ||| | || || |||||| Sbjct 106686 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGAACCCTGTCTGACTACAAC 106745 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| |||| Sbjct 106746 ATTCAGAAAGAGACCAC 106762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416469104709115