Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq218906 96.9 7e-15 seq184743 93.3 9e-14 seq624614 91.5 3e-13 seq597755 91.5 3e-13 seq481810 91.5 3e-13 seq330754 91.5 3e-13 seq314532 91.5 3e-13 seq300867 91.5 3e-13 seq274358 91.5 3e-13 seq16091 91.5 3e-13 seq274799 89.7 1e-12 seq94356 89.7 1e-12 seq371658 87.8 4e-12 seq162085 87.8 4e-12 seq389706 86.0 1e-11 seq382939 84.2 4e-11 seq8987 84.2 4e-11 >seq218906 Length=89906 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 10172 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 10113 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 10112 CCCCACATCGGGC 10100 >seq184743 Length=723 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 610 GAAAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTC 551 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||||| |||| Sbjct 550 GAGCCCCACATTGGGC 535 >seq624614 Length=40090 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 21514 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 21573 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 21574 CCCCACATTGGGC 21586 >seq597755 Length=128451 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 17480 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 17539 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 17540 CCCCACATTGGGC 17552 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 18840 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 18899 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 18900 CCCCACATTGGGC 18912 >seq481810 Length=618 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 486 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 545 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 546 CCCCACATTGGGC 558 >seq330754 Length=60163 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2968 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 2909 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 2908 CCCCACATTGGGC 2896 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 16995 GCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 16936 Query 142564 CCCACATCGGGCAGA 142578 ||||||| |||| || Sbjct 16935 CCCACATTGGGCGGA 16921 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 2454 GCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 2395 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 2394 CCCACATTGGGC 2383 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||| | | ||||||||||| ||||||||||| |||| Sbjct 2102 GCCCGGTTAGCTCAGTCGGTAGAACATTGGACTCTTAATCCCAGGGTCGTGGGTTGGAGC 2043 Query 142564 CCCACATCGGG 142574 ||||||| ||| Sbjct 2042 CCCACATTGGG 2032 >seq314532 Length=65279 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 22038 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 21979 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 21978 CCCCACATTGGGC 21966 >seq300867 Length=178935 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 142496 GTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGG 142555 ||| || |||||||||||||||||||||||||| ||||| ||||||| ||||| || Sbjct 113869 GTGTGAAAGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGG 113928 Query 142556 GTTCGAGCCCCACATCGGGC 142575 ||||||| ||| |||||||| Sbjct 113929 GTTCGAGTCCCTCATCGGGC 113948 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||||||||||||||||||||||| ||||| ||||||| ||||| |||||| Sbjct 112598 GAAAGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTC 112657 Query 142560 GAGCCCCACATCGGGCAGAAG 142580 ||| ||| |||||||| |||| Sbjct 112658 GAGTCCCTCATCGGGC-GAAG 112677 >seq274358 Length=8710 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 5390 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 5331 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 5330 CCCCACATTGGGC 5318 >seq16091 Length=63403 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 33450 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 33391 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 33390 CCCCACATTGGGC 33378 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 34000 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 33941 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 33940 CCCCACATTGGGC 33928 >seq274799 Length=1195 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 827 GCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 886 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 887 CCCACATTGGGC 898 >seq94356 Length=16455 Score = 89.7 bits (98), Expect = 1e-12 Identities = 65/73 (89%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAAT-CTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||| |||||||||| | || ||||||||||||||| Sbjct 10992 GCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATGCCAG-GGTCGTGGGTTCGAG 11050 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 11051 CCCCACATTGGGC 11063 >seq371658 Length=1208 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||||||||||||||||||||||| ||||| ||||||| ||||| |||||| Sbjct 336 GAAAGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTC 395 Query 142560 GAGCCCCACATCGGGC 142575 ||| ||| |||||||| Sbjct 396 GAGTCCCTCATCGGGC 411 >seq162085 Length=12397 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| Sbjct 9101 AGCCCGGTTAGCTCATTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 9042 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 9041 CCCCACATTGGGC 9029 >seq389706 Length=42109 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct 26586 GCCCGGTTAGCTCAGTCGGCAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 26645 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 26646 CCCACATTGGGC 26657 >seq382939 Length=56289 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||| ||||||| ||||| |||||| || Sbjct 27381 AGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTCAAG 27440 Query 142563 CCCCACATCGGGCAGAAG 142580 ||| |||||||| |||| Sbjct 27441 TCCCTCATCGGGC-GAAG 27457 >seq8987 Length=63263 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 27601 GAAAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTC 27660 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 27661 GAGCCCCAC 27669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1019447110706711