Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq34585 156 8e-33 seq133437 123 5e-23 seq500074 102 1e-16 seq2278 102 1e-16 seq407716 100 5e-16 seq620319 89.7 9e-13 seq389706 87.8 3e-12 >seq34585 Length=75490 Score = 156 bits (172), Expect = 8e-33 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||||||||| || ||||| || || || || || || ||||| || | Sbjct 7931 CAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCCTCGA 7872 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || ||||| ||||| | || || || ||||| || || || |||||||| | Sbjct 7871 GCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGA 7812 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||||||||| || || || ||||| | || || ||||| ||||||||||| | Sbjct 7811 TCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCCACCTCCAATGTGATGGTTTTAC 7752 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||||||||||| |||||||| Sbjct 7751 CGGTGAGGGTCTTGACGAAGATCTGCAT 7724 Score = 132 bits (146), Expect = 9e-26 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || ||||| || ||||| || || || || || || | || || || | Sbjct 7247 CAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCGTCCTCGA 7188 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || ||||| ||||| | || || || ||||| || || || |||||||| | Sbjct 7187 GCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGA 7128 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||||||||| || || || ||||| || || || || | ||||||||||| | Sbjct 7127 TCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCAAGAGTGATGGTTTTGC 7068 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||||||||||| |||||||| Sbjct 7067 CAGTGAGGGTCTTGACGAAGATCTGCAT 7040 Score = 132 bits (146), Expect = 9e-26 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || |||||||| |||||||| || || || || || | || || || | Sbjct 7475 CAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCTGACAGGGTACGGCCGTCCTCGA 7416 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || ||||| ||||| | || || || ||||| || || |||||||| || | Sbjct 7415 GCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGA 7356 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||||||||| || || || ||||| || || || |||| ||||||||||| | Sbjct 7355 TCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCCACCTCCAGAGTGATGGTTTTGC 7296 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || ||||| ||||| |||||||| Sbjct 7295 CAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || || ||||| || ||||| || || || || Sbjct 6810 CCACCACGGAGACGCAACACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGAC 6751 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||||| || || || ||||| Sbjct 6750 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGG 6691 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||| || || ||||| || | ||| || Sbjct 6690 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACC 6631 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | |||||||| || || ||||| || || || || |||||||| ||| Sbjct 6630 TCAAGTGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCATGATG 6580 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || || || || || ||||| || || || || Sbjct 7038 CCACCACGGAGACGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCTGAC 6979 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || || || ||||| Sbjct 6978 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGTGGG 6919 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| || |||||||| || ||| |||||||| || ||| | ||||| Sbjct 6918 ATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTTTCGATGGTATC-GCTGGGCTCTAC 6860 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| ||||| ||||| |||||||| Sbjct 6859 CTCTAGTGTGATGGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || || ||||| || ||||| || || || || Sbjct 7722 CCACCACGGAGACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGAC 7663 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || || || || || Sbjct 7662 AGGGTACGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGCGGG 7603 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || |||||||| || || |||||||| || | ||||| Sbjct 7602 ATACCTTCCTTGTCCTGGATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCTACC 7543 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| || || ||||||||||| || || |||||||| Sbjct 7542 TCTAATGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 >seq133437 Length=111544 Score = 123 bits (136), Expect = 5e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||| |||||| || ||||| || || || || || || ||||| || | Sbjct 106773 CAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCCTCCA 106714 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || ||||| ||||| | || || | ||| | || || || | |||||| | Sbjct 106713 GCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCTTGGA 106654 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| || || || |||| || || || |||| ||||||||||| | Sbjct 106653 TCTTCGCCTTTACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTTTTAC 106594 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||||||||||| || ||||| Sbjct 106593 CGGTGAGGGTCTTGACGAAGATTTGCAT 106566 >seq500074 Length=18953 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| ||||| || |||||||| |||||| ||||||| | ||| || ||| Sbjct 15764 CCTTCCTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCTGAAGGTTCCACCTCC 15705 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || ||||| |||||||| || || |||||||| Sbjct 15704 AAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 15661 >seq2278 Length=14222 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| ||||| || |||||||| |||||| ||||||| | ||| || ||| Sbjct 955 CCTTCCTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCTGAAGGTTCCACCTCC 896 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || ||||| |||||||| || || |||||||| Sbjct 895 AAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 852 >seq407716 Length=13296 Score = 100 bits (110), Expect = 5e-16 Identities = 140/193 (73%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681 ||| || || | || ||||| || ||| |||||||||| | | || ||| |||||| Sbjct 6535 CAGATTTTCATTGACGATGCCGTCACTGGCTGCAAAGAATGCCAAGACGTGTGAGATGAA 6594 Query 10682 GTGGCGCTCAT-CATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGA 10740 ||| ||||| | |||| ||| ||| | ||| | | ||| ||||| | ||| | || Sbjct 6595 GTGCTTCTCATTCTTCGT-CAGCTTTGC---CCAATGTTCCAGATCCTTGGAGAGGTCGA 6650 Query 10741 CCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGT 10800 |||| ||| | |||||||| | || |||| ||||||||||| || | |||||| | | Sbjct 6651 CCTCTTCCGCCGTCCAGAACGACGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTGAT 6710 Query 10801 ACCGGATGGGGAA 10813 || |||||||||| Sbjct 6711 ACTGGATGGGGAA 6723 >seq620319 Length=78974 Score = 89.7 bits (98), Expect = 9e-13 Identities = 141/195 (72%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCGAGG-ATGTGCTTGATG 10679 ||| || || | || ||||| || || |||| ||||| ||| || ||||| |||| Sbjct 13699 CAGATTTTCATTGACGATGCCGTCACTTGCTGCGAAGAATGCCAAGACATGTGA--GATG 13642 Query 10680 AAGTGGCGCTCAT-CATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTG 10738 ||||| ||||| | |||| ||| ||| | ||| | | ||| ||||| | ||| | Sbjct 13641 AAGTGCTTCTCATTCTTCGT-CAGCTTTGC---CCAATGTTCCAGATCCTTGGAGAGGTC 13586 Query 10739 GACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGG 10798 |||||| ||| | |||||||| | || |||| ||||||||||| || | |||||| | Sbjct 13585 GACCTCTTCCGCTGTCCAGAACGATGCCTCGGCTTTCTTGTACATGTGCCAGATGTCGTG 13526 Query 10799 GTACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 13525 ATACTGGATGGGGAA 13511 >seq389706 Length=42109 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 84452 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 84511 ||||||||||||||||||||||||||||| | ||||||| | |||||||||||| Sbjct 26582 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTC 26641 Query 84512 GAGCCCCACATCGGGC 84527 ||||||||||| |||| Sbjct 26642 GAGCCCCACATTGGGC 26657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914283163700120