Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq34585 100 2e-16 >seq34585 Length=75490 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | ||||| ||||| || |||||||| || Sbjct 7497 ATACCACCACGGAGACGAAGCACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAGTCT 7438 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| || || || || || |||||| ||||||||||||| || || || Sbjct 7437 GACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGT 7378 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| |||| | ||||| ||||| | | || Sbjct 7377 GGGATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCC 7318 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||||| || || || || || || |||||||| Sbjct 7317 ACCTCCAGAGTGATGGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 7268 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | ||| | || ||||| || || || ||||| || Sbjct 7041 ATACCACCACGGAGACGCAACACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAGTCT 6982 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| || || || || || ||||| ||||||||||||| || || || Sbjct 6981 GACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGT 6922 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| |||||| ||| | | ||| | ||| ||| ||| || Sbjct 6921 GGGATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTTTCGATGGTATCGCTGGGCTCT 6862 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| || || || || || || |||||||| Sbjct 6861 ACCTCTAGTGTGATGGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 6812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| | ||| | || || ||||| ||||||||||| || Sbjct 7950 CCACCACGGAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAT 7891 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || | ||| || || || || |||||| ||||||||||||| || || || || Sbjct 7890 AGGGTTCTGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGG 7831 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || |||||||| |||||| |||| | ||||| ||||| | | || || Sbjct 7830 ATACCCTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGGCTCCACC 7771 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||||| ||||| || || || || || |||||||| Sbjct 7770 TCCAATGTGATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7724 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || || || || || ||||| || Sbjct 7269 ATACCACCACGGAGACGAAGCACAAGATGAAGAGTTGACTCCTTCTGGATATTGTAGTCT 7210 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| || || || || || |||||| ||||||||||||| || || || Sbjct 7209 GACAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGT 7150 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || |||||||| |||||| |||| | ||||| ||||| | | || Sbjct 7149 GGGATACCCTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTTGGCTCC 7090 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||| || || || || || || |||||||| Sbjct 7089 ACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 7040 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | ||| | || || || || || || ||||| || Sbjct 7725 ATACCACCACGGAGACGCAACACGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCT 7666 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| || || || || || || || ||||||||||||| || || || Sbjct 7665 GACAGGGTACGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGC 7606 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| |||||| ||| | | ||| | ||| || ||| || Sbjct 7605 GGGATACCTTCCTTGTCCTGGATCTTTGCTTTCACATTTTCGATGGTATCACTGGGCTCT 7546 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| || || || || ||||| |||||||| Sbjct 7545 ACCTCTAATGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 7496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416872349296452