Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq620319 150 3e-31 seq407716 145 1e-29 seq286747 123 5e-23 seq251981 122 2e-22 seq320776 116 7e-21 seq496440 107 4e-18 seq364598 104 4e-17 >seq620319 Length=78974 Score = 150 bits (166), Expect = 3e-31 Identities = 172/227 (76%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || ||||| | || || | | |||||||| | |||||||||||| Sbjct 15458 CTGTTCAACGCTATCGAGACTCTTCCGTGTGTAACCAAGAAGGCACAGTGGGCGCTCAAC 15517 Query 42669 TGGATCGAGAGTCCCGAC---GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 ||||||| | |||| || ||||| ||| | || || ||| ||||||| Sbjct 15518 TGGATCGCA---CACGACAAGGCTGATTTCGGTACAAGGGTAGTTGCATTTGCCGCCGTA 15574 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC- 42784 ||||| ||||||||||| ||| |||| || ||||||||||| | ||| | |||| | | Sbjct 15575 GAGGGAATCTTCTTCTCTGGCTCCTTTGCTGCCATCTTCTGGTTGAAG-AAAAGGGGACT 15633 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 |||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 15634 AATGCCCGGACTCACCTTCTCCAACGAACTTATCAGCAGAGACGAGG 15680 >seq407716 Length=13296 Score = 145 bits (160), Expect = 1e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || ||||| | || || | | |||||||| | |||||||||||| Sbjct 4806 CTGTTCAACGCTATCGAGACTCTTCCGTGTGTAACCAAGAAGGCACAGTGGGCGCTCAAC 4747 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||||| ||| || ||||| |||| | || || ||| | || || ||| Sbjct 4746 TGGATCGCACACGACGAGGCTGATTTCGGGACGAGGGTAGTCGCATTTGCTGCTGTAGAG 4687 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 || ||||||||||| ||| |||| || ||||||||||| | ||| ||| || ||| Sbjct 4686 GGAATCTTCTTCTCAGGCTCCTTTGCTGCCATCTTCTGGTTGAAGAAGAGGGGACTAATG 4627 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || |||||||||||||| |||||||| |||||||| ||||||| Sbjct 4626 CCTGGACTCACCTTCTCCAACGAACTTATCAGCAGAGACGAGG 4584 >seq286747 Length=126893 Score = 123 bits (136), Expect = 5e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| |||| | ||| ||||| ||| ||||| |||||||||||||| ||||||||||| Sbjct 124251 CACCTCATCCGGGCTGGAGTACTCGACTATCTCCGTGCAGAGGTTACTACACTTGATGGT 124192 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||||| ||| || ||| |||| ||||||| ||||||||| | |||| |||| Sbjct 124191 GCCCAGGTTCTGTTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACACCATGTAGGGGGT 124132 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGA 244877 || ||||| ||||| | | |||| || ||| ||| | ||||||| Sbjct 124131 ACCCGTCTCCGTCTGGGATTCAATGACGGCGTACCACAGGCTCTGGGCCTTGA 124079 Score = 96.9 bits (106), Expect = 6e-15 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 |||||||| || |||| ||||| | | || ||||||| |||||| |||||||| | | Sbjct 122673 GGGCACATCAGCGTCCAATCGCCATCTTGCTCAACCCTCTTCATGAACAGGTCGGGCACC 122614 Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT-CAG 245088 || ||||| | ||| ||||| | || | |||||| || || ||||||| | ||| Sbjct 122613 CACAGGGCGTAGAAAAGGTCACGGGCACGCTGCTCCTCTTTCCCGTGGTTCTTCTTGCAG 122554 Query 245089 CTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148 || | ||||| |||| ||| | ||||||||||| | ||||| || | ||| || || Sbjct 122553 -TCTAGGAAGTCGAAGATGTCCGCATGCCAGGGCTCGAGGTAGATTGCAAAGGCACCTGG 122495 Query 245149 CCGCT 245153 |||| Sbjct 122494 ACGCT 122490 >seq251981 Length=36728 Score = 122 bits (134), Expect = 2e-22 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| |||| | ||| ||||| || ||||| |||||||||||||||||||||||||| Sbjct 20613 CACCTCATCCGGGCTGGAGTACTCAACGATCTCCGTGCAGAGGTTACTGCACTTGATGGT 20672 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 |||||||| ||| || ||| |||| |||||| ||||||||||| |||| |||| Sbjct 20673 GCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAATGGTCCTTGTAGACCATGTAGGG 20729 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 244082 AGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTG 244141 || ||| |||||| | ||| ||||||||||| || ||||| | ||||| ||||||| Sbjct 17346 AGATGCGGGTTCACAATCTGGAACTCTCCCGAGAGGACGCGCCTGGTGTAGATGTTGCTG 17405 Query 244142 CTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATG 244201 || |||||||||| ||| ||||||| || ||||| |||||| || ||||||||| Sbjct 17406 GTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTGGAGGCGGTCGGCATG 17465 Query 244202 GGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTC 244237 || | || ||||||||||| | | ||||||| || Sbjct 17466 GGAGCCAGGAGCAGACTGTTGCGGAGGCCGTGCTTC 17501 Score = 100 bits (110), Expect = 5e-16 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 244342 CTCGTAGGTCGGGTAGGGACCGTCGCGCTGG--GCCAGCTTACAGCTCTCGTCGAGGGCG 244399 || ||| ||| ||| || ||||| | ||| ||||| | ||||| | | | ||| Sbjct 18668 CTTGTACGTCTCGTACGGTCCGTCTC--TGGCAGCCAGTTCGCAGCTGGCCTTCAACGCG 18725 Query 244400 GCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAG 244459 || |||||||||||||| |||||| |||| | | ||||| | || ||| Sbjct 18726 GCATAGTAGATGGTCTCAAAGATCTGGATGTTGAGTTTCTTGGCCTCGGGGCTTTCGAAT 18785 Query 244460 GGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTG 244519 |||| || |||||| ||||| | || ||||| ||||| |||||||| |||||||| | | Sbjct 18786 GGGAAGCGCATCATGATGAAAGCATCTGCCAGACCCTGGACGCCGATACCGATGGGGCGG 18845 Query 244520 TGTCGCTTGTTGGAGCGCATGGC 244542 |||||| ||||| |||| |||| Sbjct 18846 TGTCGCATGTTGCTGCGCTTGGC 18868 >seq320776 Length=21916 Score = 116 bits (128), Expect = 7e-21 Identities = 169/238 (71%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 |||||| || ||||||||||| ||||| ||||||||| | |||||||| || || | || Sbjct 11398 GATGCCAGGTCTCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTCCACTGCGA 11339 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 |||||||||||| || ||||| ||| ||| ||| || || || ||| Sbjct 11338 CTTTGCCTGCCTGCTCTTCTC---CCATCTCCTCCACCGTCCGTCCGTCTCTCGTATCCA 11282 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 | |||||| ||| || || | ||| |||||||||||| | | || ||||| Sbjct 11281 AGAGATCATCGGGGAAGCAGTCCGCCTGGAGGAGGAGTTCCTCAGCGACGCTCTCCCCGT 11222 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 |||| |||| |||||| || |||||||| |||||||||||| || |||||| Sbjct 11221 CGCCCTCATCGGGATGAACGCCGTACTCATGTGTCAGTACATCCAGTTTGTGGCCGAC 11164 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGC 43130 || || ||||| |||||||||||||||||||| |||||| ||||||| ||||||||||| Sbjct 9883 CCGTTTGACTTCATGGAGAACATCTCGTTGGAAGGCAAGTCCAACTTCTTCGAGAAGCGG 9824 Query 43131 GTCGCCGACTACCAG 43145 |||| ||| |||||| Sbjct 9823 GTCGGCGAGTACCAG 9809 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 42631 TGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAA 42690 |||||| | |||||||| || || ||||| || ||||||| | | ||| | Sbjct 15055 TGCCCTTTGTTAAGAAGAAAGCTGATTGGGCCCTTCGATGGATCGGCACTAAGGACTCCT 14996 Query 42691 CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | ||| | ||||| |||| || ||| | || |||||||| |||||||||||||| | | Sbjct 14995 CATTCAGTGAGAGATTGGTGGCGTTTGCTGCTGTCGAGGGAATCTTCTTCTCGGGTTCGT 14936 Query 42751 TCGCCTCCATCTTCTGGCTCAA 42772 |||| |||||||||||||||| Sbjct 14935 TCGCAGCCATCTTCTGGCTCAA 14914 >seq496440 Length=42271 Score = 107 bits (118), Expect = 4e-18 Identities = 167/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 |||||| || ||||||||||| ||||| ||||||||| | |||||||| || || | || Sbjct 16503 GATGCCAGGTCTCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTCCACTGCGA 16444 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 |||||||||||| || ||||| ||| ||| ||| || || || ||| Sbjct 16443 CTTTGCCTGCCTGCTCTTCTC---CCATCTCCTCCACCGTCCGTCCGTCTCCCGTATCCA 16387 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 | |||||| ||| || || | ||| |||| ||||||| | | || ||||| Sbjct 16386 AGAGATCATCGGGGAAGCAGTCCGCCTGGAGGAGGAATTCCTCAGCGACGCTCTCCCCGT 16327 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 |||| | || |||||| || |||||||| |||||||||||| || |||||| Sbjct 16326 CGCCCTCATTGGGATGAACGCCGTACTCATGTGTCAGTACATCCAGTTTGTGGCCGAC 16269 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGC 43130 || || ||||| |||||||||||||||||||| |||||| ||||||| ||||||||||| Sbjct 15225 CCGTTTGACTTCATGGAGAACATCTCGTTGGAAGGCAAGTCCAACTTCTTCGAGAAGCGG 15166 Query 43131 GTCGCCGACTACCAG 43145 |||| ||| |||||| Sbjct 15165 GTCGGCGAGTACCAG 15151 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 42631 TGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAA 42690 |||||| | |||||||| || || ||||| || ||||||| | ||| | Sbjct 19332 TGCCCTTTGTGAAGAAGAAAGCTGATTGGGCCCTGCGATGGATCGGCGCTAGGGACTCCT 19273 Query 42691 CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | ||| | ||||| |||| || ||| | || |||||||| ||||||||||||||| | | Sbjct 19272 CATTCAGTGAGAGATTGGTGGCGTTTGCTGCTGTCGAGGGAATCTTCTTCTCGGGCTCGT 19213 Query 42751 TCGCCTCCATCTTCTGGCTCAA 42772 |||| |||||||||||||||| Sbjct 19212 TCGCAGCCATCTTCTGGCTCAA 19191 >seq364598 Length=45638 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 |||||| | ||| ||||||||||| || ||||| | ||||| ||||||| || ||| Sbjct 3336 GTTCACGATCTGGAACTCTCCCGAGAGGACGCGCCTGGTGTAGATGTTGCTGGTGTACGG 3277 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 |||||| ||| ||||||| || ||||| || ||| || ||||||||||| | || Sbjct 3276 CTCGATAGACTCGTTGTTGCCAAGGATCTGGGCAGTGGAAGCGGTCGGCATGGGAGCCAG 3217 Query 244210 CAGCAGACTGTTCCTCACGCCGTGC 244234 ||||||||||| | | ||||||| Sbjct 3216 GAGCAGACTGTTGCGGAGGCCGTGC 3192 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 244397 GCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTG 244456 ||||| |||||||||||||| |||||| |||| | | ||||| | || | Sbjct 2016 GCGGCATAGTAGATGGTCTCAAAGATCTGGATGTTGAGTTTCTTGGCCTCGGGGCTCTCG 1957 Query 244457 AAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGT 244516 || |||| || ||||| |||||| | || ||||| ||||| |||||||| |||||||| Sbjct 1956 AACGGGAAGCGCATCAAGATGAAGGCATCCGCCAGACCCTGGACGCCGATACCGATGGGG 1897 Query 244517 CTGTGTCGCTTGTTGGAGCGCATGGC 244542 | ||||||| ||||| |||| |||| Sbjct 1896 CGGTGTCGCATGTTGCTGCGCTTGGC 1871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 936819061018960