Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq61311 96.9 3e-15 seq447969 87.8 2e-12 >seq61311 Length=60834 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||||| || |||||||| | ||||||||||||||||| ||| ||| ||| ||||| Sbjct 50656 GTAGACATGTGCATCTCCAATGGTGTGAATAAACTCCCCTGGTTGAAGGTTAGTTACATG 50597 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || | ||| || || || || ||||||||||||||||| || || || |||| |||| Sbjct 50596 GGCTATCATGTATGTCAACAGAGAATAGCTGGCAATGTTGAATGGCACGCCCAGACCC 50539 >seq447969 Length=52233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||||| ||||||||||| | |||||||| || || || ||| || |||| ||||| Sbjct 18408 GTAGACATGGGCATCTCCTATAGTGTGAATGAATTCGCCTGGTTGGAGGTCAGTTACATG 18467 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCA 20303 || | |||||| || || || ||||||||||||||||| || || || |||| Sbjct 18468 GGCTATCATATATGTCAACAGAGAATAGCTGGCAATGTTGAATGGCACGCCCA 18520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437857977361640