Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq250674 86.0 1e-11 >seq250674 Length=71378 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGC 243570 ||||| ||||| | |||||||||||| | || || ||| |||| || || || Sbjct 3449 GAAGCTGTTGAGATTGAAAAGGAATTCTTAACGGATGCCTTTCAATGCGCTCTAATCGGG 3508 Query 243571 ATGAACTCTGAACTC--ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCG 243628 || ||| | ||||| ||||||||||| || ||||| || ||||| | | | | | Sbjct 3509 ATCAACGC--AACTCTGATGGGACAGTATATAGAATTTGTTGCCGATAGACTACTACTTG 3566 Query 243629 CGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTT 243688 ||| || || || || ||||| || | || || |||| ||||||||| ||||| Sbjct 3567 AGCTCGGATACGATAAGGTGTATAATGTTGACAATCCATTTGACTTTATGGAAAACATTT 3626 Query 243689 CGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || | |||| || ||||| || || |||| || || | || |||||| Sbjct 3627 CGTTGGAAGGCAAGACTAATTTTTTTGAAAGACGAGTTGGGGAATATCAA 3676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1093877772673850