Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq34585 107 2e-18 seq156656 93.3 4e-14 seq133437 86.0 6e-12 seq269770 84.2 2e-11 >seq34585 Length=75490 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| ||||||||||| || | | ||| | | || Sbjct 7935 AGAACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGATAGGGTTCTGCCATCC 7876 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||| |||||||| || || || || || ||||| ||| Sbjct 7875 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCTTTGTCT 7816 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||||||| || | || |||| |||| ||||| || | || | ||| Sbjct 7815 TGGATCTTTGCCTTTACATTTTCAATAGTGTCACTCGGC-TCCACCTCCAATGTGATGGT 7757 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | || || ||||| || ||||| Sbjct 7756 TTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7724 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||||| || || || || || || ||||| || | | ||||| | || || Sbjct 6793 CACAAGATGAAGTGTTGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCCTC 6734 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||||||||| || | ||||| |||||||| || || || || ||||| || || || Sbjct 6733 AAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTG 6674 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | ||||||| | || || || | || | |||||| Sbjct 6673 GATCTTGGCCTTCACATTTTCAATGGTATCACTAGGTTCGACCTCAAGTGTGATGGTCTT 6614 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || | |||||| || || || ||||| Sbjct 6613 GCCAGTGAGAGTTTTCACAAAGATCTGCAT 6584 >seq156656 Length=67780 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || ||||| | || || || || ||||||||||| |||| | |||||| | Sbjct 29878 CTCAGTACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGGCCA 29819 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 ||||| ||||||||||| ||| | || || ||||||||||| |||||||| ||| Sbjct 29818 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 29765 >seq133437 Length=111544 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || | ||||| ||||||||||| || | | ||| | | || Sbjct 106777 AGCACAAGATGGAGAGTGGTCTCTTTCTGAATGTTGTAGTCAGACAGGGTTCTGCCATCC 106718 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||| |||||||| | || | || || |||| ||| Sbjct 106717 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATGTGGTTGGATACCCTCTTCGTCT 106658 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||||| || | | |||| | ||||| || | || | ||| Sbjct 106657 TGGATCTTCGCCTTTACATTTTCAATAATGTCACTTGGCTCCACCTCCAGTGTGATGGTT 106598 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | || || ||||| |||||||| Sbjct 106597 TTACCGGTGAGGGTCTTGACGAAGATTTGCAT 106566 >seq269770 Length=105173 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || ||||| | || || || || || |||||||| |||| | ||||| | Sbjct 72015 CTCAGTACGAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCA 71956 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 ||||| ||||||||||| ||| | || || ||||||||||| |||||||| ||| Sbjct 71955 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 71902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495665934845240