Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq251981 138 1e-27 seq364598 123 2e-23 seq286747 107 2e-18 >seq251981 Length=36728 Score = 138 bits (152), Expect = 1e-27 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 94999 ATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTA 95058 ||||| |||| |||| | |||||||| | |||| | | || ||||||||| ||||| Sbjct 17575 ATTTTGCAGTACGACATGTGGGGTGTCACGCCCACCGACCTCCACGACTGGGCGGCTCTG 17516 Query 95059 CGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACG 95118 || || || || ||||| | ||| ||||| |||| |||||||| || Sbjct 17515 AAGGCCGACATTGCGAAGCACGGCCTCCGCAACAGTCTGCTCCTGGCTCCCATGCCGACC 17456 Query 95119 GCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTG 95178 ||||||||||| |||||||| |||||||||||||| |||| || | |||| |||| | Sbjct 17455 GCCTCCACGGCCCAGATCCTCGGCAACAACGAGTCCATCGAGCCGTACACCAGCAACATC 17396 Query 95179 TACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGAC 95238 |||| |||||| || ||| | || || |||| | | ||| ||| ||||| |||| Sbjct 17395 TACACCAGGCGCGTCCTCTCGGGAGAGTTCCAGATTGTGAACCCGCATCTCCTGAAGGAC 17336 Query 95239 CTGACGTCTCTGGGTGTGTGG 95259 |||||| ||| || ||||| Sbjct 17335 CTGACGGATCTTGGCCTGTGG 17315 Score = 122 bits (134), Expect = 9e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 94173 GGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCT 94232 |||| ||||||| |||| |||||||| ||||| |||||| | | ||| | ||| | Sbjct 21565 GGGTGCTTTCGCAATCTACCTCGAGCCGTGGCATGCGGACATCTTCGACTTCCTAGAC-T 21507 Query 94233 GCGA-AAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGG 94291 || | ||||||||||| || || | || | ||| | ||||| |||||||| || |||| Sbjct 21506 GCAAGAAGAACCACGGGAAAGAGGAGCAGCGTGCCCGTGACCTTTTCTACGCCCTGTGGG 21447 Query 94292 TGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCA 94351 |||| ||||| || ||||| | |||||| || | || |||| || | || ||| Sbjct 21446 TGCCCGACCTGTTCATGAAGAGGGTCGAGCAAGATGGCGATTGGACGCTGATGTGCCCCC 21387 Query 94352 ATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATG 94405 ||||||| || ||||| | ||||| || ||| | |||||||| |||||| Sbjct 21386 ATGAATGCCCAGGACTCGCAGACGTGTGGGGAGAGGAATTTGAAGAACTGTATG 21333 >seq364598 Length=45638 Score = 123 bits (136), Expect = 2e-23 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 94999 ATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTA 95058 ||||| |||| |||| | ||||| || | |||| | | || ||||||||| || || Sbjct 3115 ATTTTGCAGTACGACATGTGGGGCGTCACGCCCACCGACCTCCACGACTGGGCGGCGCTG 3174 Query 95059 CGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACG 95118 || || | ||| ||||| | ||| ||||| |||| |||||||| || Sbjct 3175 AAGGCCGACATCGCCAAGCACGGCCTCCGCAACAGTCTGCTCCTGGCTCCCATGCCGACC 3234 Query 95119 GCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTG 95178 || ||||| || ||||||||||||||||||||||| |||| || | |||| |||| | Sbjct 3235 GCTTCCACTGCCCAGATCCTTGGCAACAACGAGTCTATCGAGCCGTACACCAGCAACATC 3294 Query 95179 TACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGAC 95238 |||| |||||| || ||| | || || |||| || | ||| || ||||| |||| Sbjct 3295 TACACCAGGCGCGTCCTCTCGGGAGAGTTCCAGATCGTGAACCCTCATCTCCTGAAGGAC 3354 Query 95239 CTGACGTCTCTGGGTGTGTGG 95259 |||||| ||| || ||||| Sbjct 3355 CTGACGGATCTCGGCCTGTGG 3375 >seq286747 Length=126893 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 94174 GGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTG 94233 ||| | || || |||| |||||||||||||| |||||| | | ||| | ||| || Sbjct 122498 GGTGCCTTTGCAATCTACCTCGAGCCCTGGCATGCGGACATCTTCGACTTCCTAGAC-TG 122556 Query 94234 CGA-AAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGT 94292 | | ||||||||||| || || | || | ||| | ||||| |||||||| || ||||| Sbjct 122557 CAAGAAGAACCACGGGAAAGAGGAGCAGCGTGCCCGTGACCTTTTCTACGCCCTGTGGGT 122616 Query 94293 GCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAA 94352 ||| ||||| || ||||| | || ||| || | || |||| || | || ||| | Sbjct 122617 GCCCGACCTGTTCATGAAGAGGGTTGAGCAAGATGGCGATTGGACGCTGATGTGCCCCCA 122676 Query 94353 TGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATG 94405 ||||| || ||||| | ||||| || ||| | |||||||| |||||| Sbjct 122677 CGAATGCCCAGGACTCGCAGACGTGTGGGGAGAGGAATTTGAAGAACTGTATG 122729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 490783527453160